Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 645,914 | 0 | A | G | 54.5% | 6.0 / 12.4 | 11 | T11T (ACT→ACC) ‡ | citE | citrate (pro‑3S)‑lyase subunit beta |
Reads supporting (aligned to +/- strand): ref base A (0/5); new base G (6/0); total (6/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.16e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CATCAGCCGGGTAGATGAAGGAGTTGCTGACCATCGCGGCATTGGCACCAGGCACAAACAACATGCTGCGGCGGGTGCGAGTTTTACGTTGTTGCAGCGAAGCGGAAATCATTGGCAATCCTCCCATGGCAGAGCCGGGATACCGCTGGCGCGTGCC > NZ_CP009273/645835‑645991 | cATCAGCCGGGTAGATGAAGGAGTTGCTGACCATCGCGGCATTGGCACCAGGCACAAACAACATGCTGCGGCGGGGGCGGGGTTTATgtt > 1:762244/1‑90 (MQ=255) gAAGGAGTTGCTGACCATCGCGGCATTGGCACCAGGCACAAACAACATGCTGCGGCGGGTGCGAGTTTTACGTTGTTGCAGCGAAGCGGa < 1:756329/90‑1 (MQ=255) ggAGTTGCTGACCATCGCGGCATTGGCACCAGGCACAAACAACATGCTGCGGCGGGGGGGGGGTTTTCGTTGTTGCAGCGAAGCGGgaaa > 1:171580/1‑89 (MQ=255) tGCTGACCATCGCGGCATTGGCACCAGGCACAAACAACATGCTGCGGCGGGGGGGGGGTTTTCGTTTTTTGAGGGAAACGGGAAACAttt > 1:330746/1‑89 (MQ=255) gcgGCATTGGTACCAGGCACAAACAACATGCTGCGGCGGGTGCGAGTTTTACGTTGTTGCAGCGAAGCGGAAATCATTGGCAATCCTccc < 1:714498/90‑1 (MQ=255) ttGGCACCAGGCACAAACAACATGCTGCGGCGGGTGCGAGTTTTACGTTGTTGCAGCGAAGCGGAAATCATTGGCAATCCTCCCATGGCa < 2:330746/90‑1 (MQ=255) ttGGCACCAGGCACAAACAACATGCTGCGGCGGGTGCGAGTTTTACGTTGTTGCAGCGAAGCGGAAATCATTGGCAATCCTCCCATGGCa < 2:762244/90‑1 (MQ=255) aCCAGGCACAAACAACATGCTGCGGCGGGTGCGAGTTTTACGTTGTTGCAGCGAAGCGGAAATCATTGGCAATCCTCCCATGGCAGAGcc < 2:215107/90‑1 (MQ=255) cAGGCACAAACAACATGCTGCGGCGGGTGGGGGGTTTATGTTGTTGCAGCGAAACGGGAAACATTGGCAATCCTCCCATGGCGGAGCCgg > 1:173242/1‑90 (MQ=255) cAGGCACAAACAACATGCTGCGGCGGGGGGGGGGTTTTTGTTTTTTTAGCGGAGCGGAAAACAATTGGGATCCTCCCCTGGGAGAGCCgg > 1:865982/1‑90 (MQ=255) gcggcgGGGGCGGGGTTTTTGTTGTTTCAGCGAAACGGGAAACATTGGCAATCCTCCCCTGGCAGAGGCGGGGTACCCCCGGcgcggggc > 2:41279/1‑86 (MQ=255) | CATCAGCCGGGTAGATGAAGGAGTTGCTGACCATCGCGGCATTGGCACCAGGCACAAACAACATGCTGCGGCGGGTGCGAGTTTTACGTTGTTGCAGCGAAGCGGAAATCATTGGCAATCCTCCCATGGCAGAGCCGGGATACCGCTGGCGCGTGCC > NZ_CP009273/645835‑645991 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |