New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3035672	53 (0.800)	3 (0.050)	3/146	4.5	6.0%	intergenic (+20/+176)	ygfZ/yqfA	tRNA‑modifying protein YgfZ/hemolysin III family protein
	?	NZ_CP009273	= 3035679	48 (0.840)					intergenic (+27/+169)	ygfZ/yqfA	tRNA‑modifying protein YgfZ/hemolysin III family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3035573‑3035672 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcatcaggcGATAAATGCCTGATGCGATAAAGAGATTTACTCTTCGAGCGAATACGGCAGCGGCTCGATATGCAATGTATTCGCATCGTCG  <  NZ_CP009273/3035679‑3035598                                                                                                                                                                                        AACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTAT                                                                                              <  2:1325814/90‑1  ACCGGATAGCATCTTCCGCGTACGCGACGATGCAAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATC                                                                                             <  2:1779123/90‑1                                              ATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGC                                                                                    >  1:21921/1‑55                                              ATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGC                                                                                    <  2:21921/55‑1                                                                     CTCGAAGAGTAAATCTCTTTATCGCATCAGGCGATAAATGCCTGATGCGATAAAGAGATTTACTCTTCGAGCGAATACGGCAGCGGCTCG                          >  1:1871617/1‑90                                                                        GAAGAGTAAATCTCTTTATCGCATCAGGCGATAAATGCCTGATGCGATAAAGAGATTTACTCTTCGAGCGAATACGGCAGCGGCTCGATA                       >  2:220288/1‑90                                                                              TAAATCTCTTTATCGCATCAGGCGATAAATGCCTGATGCGATAAAGAGATTTACTCTTCGAGCGAATACGGCAGCGGCTCGATATGCAAT                 <  1:220288/90‑1                                                                                             CATCAGGCGATAAATGCCTGATGCGATAAAGAGATTTACTCTTCGAGCGAATACGGCAGCGGCTCGATATGCAATGTATTCGCATCGTCG  <  1:957449/90‑1                                                                                                                                                                                        AACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3035573‑3035672 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcatcaggcGATAAATGCCTGATGCGATAAAGAGATTTACTCTTCGAGCGAATACGGCAGCGGCTCGATATGCAATGTATTCGCATCGTCG  <  NZ_CP009273/3035679‑3035598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.