| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,620,647 | 0 | T | A | 58.3% | 4.9 / 13.5 | 12 | S331C (AGC→TGC) | dcp | peptidyl‑dipeptidase Dcp |
| Reads supporting (aligned to +/- strand): ref base T (5/0); new base A (0/7); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.26e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTCC > NZ_CP009273/1620599‑1620732 | cccGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAgg > 1:1479636/1‑90 (MQ=255) cccgTCCCTGTTCCGCAAAAAATCCCCAGCCCCCCGGCTGCGCGCAAACCCCCCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTa < 2:756932/89‑1 (MQ=255) cTGTCCCGCAAAAAATCCCCCCCCCCCCGGCGGCGCGCAACCCCCCCCCTGCTGTTTATCGAAAACCGCCTGTATGGAGGCTAATTCAtc < 1:935336/90‑1 (MQ=255) gTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCAtcgc > 2:1458761/1‑90 (MQ=255) aaaaaaaTGCCCAGCCCCACGGCTGCGCGCAAACCCCCCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCAc < 2:197396/87‑1 (MQ=255) ccccAGGGCTGCGCGCAAACCCCCCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCt < 2:1479636/89‑1 (MQ=255) cccgggCTGCGCGTAAACCCCCCCCTGCTGTTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTgg < 2:782601/86‑1 (MQ=255) tGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAAtt > 1:239968/1‑90 (MQ=255) tGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAAtt > 1:819324/1‑90 (MQ=255) tGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAAtt > 2:1273543/1‑90 (MQ=255) gcgcAAACCCCCCCCTGCTGCTTATCAATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTcc < 2:1211136/90‑1 (MQ=255) ccgcAAACCCCCCCCTGTTCTTTATCAAAAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTcc < 2:950606/89‑1 (MQ=255) | CCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTCC > NZ_CP009273/1620599‑1620732 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |