Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,620,654 | 0 | G | C | 58.3% | 5.9 / 14.2 | 12 | G328G (GGC→GGG) | dcp | peptidyl‑dipeptidase Dcp |
Reads supporting (aligned to +/- strand): ref base G (5/0); new base C (0/7); total (5/7) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.26e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTCCCGCATA > NZ_CP009273/1620599‑1620738 | cccGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAgg > 1:1479636/1‑90 (MQ=255) cccgTCCCTGTTCCGCAAAAAATCCCCAGCCCCCCGGCTGCGCGCAAACCCCCCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTa < 2:756932/89‑1 (MQ=255) cTGTCCCGCAAAAAATCCCCCCCCCCCCGGCGGCGCGCAACCCCCCCCCTGCTGTTTATCGAAAACCGCCTGTATGGAGGCTAATTCAtc < 1:935336/90‑1 (MQ=255) gTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCAtcgc > 2:1458761/1‑90 (MQ=255) aaaaaaaTGCCCAGCCCCACGGCTGCGCGCAAACCCCCCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCAc < 2:197396/87‑1 (MQ=255) ccccAGGGCTGCGCGCAAACCCCCCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCt < 2:1479636/89‑1 (MQ=255) cccgggCTGCGCGTAAACCCCCCCCTGCTGTTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTgg < 2:782601/86‑1 (MQ=255) tGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAAtt > 1:239968/1‑90 (MQ=255) tGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAAtt > 1:819324/1‑90 (MQ=255) tGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAAtt > 2:1273543/1‑90 (MQ=255) gcgcAAACCCCCCCCTGCTGCTTATCAATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTcc < 2:1211136/90‑1 (MQ=255) ccgcAAACCCCCCCCTGTTCTTTATCAAAAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTcc < 2:950606/89‑1 (MQ=255) acccccccCTGCTGTTTATCGAAACCCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTCCCGCATa < 2:777645/88‑1 (MQ=255) | CCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGGAGGCTAATTCATCGCTCGCACGTTGACGCGCCGCTGGAACAATTTCCCGCATA > NZ_CP009273/1620599‑1620738 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |