| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 287112 | NA (NA) | 24 (1.160) | 19/166 | 0.1 | 88.9% | intergenic (‑55/‑99) | BW25113_RS01405/BW25113_RS01410 | IS1‑like element IS1B family transposase/hypothetical protein |
| ? | NZ_CP009273 | 481716 = | 3 (0.140) | coding (500/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/287024‑287112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTG > NZ_CP009273/481716‑481802 AACAGGAGGGCCAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 2:279567/90‑1AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 2:171499/90‑1 GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGC > 1:156490/1‑90 GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCG < 1:22976/90‑1 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTA > 2:153418/1‑90 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCT < 1:153418/90‑1 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGG > 2:577933/1‑90 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGA < 1:45096/90‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTT > 1:459295/1‑90 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTT > 2:388795/1‑90 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:391786/1‑50 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 2:391786/50‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCC < 1:513075/83‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCC > 2:513075/1‑83 TAAATCAGTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAA < 1:577933/90‑1 GTAAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAA > 2:318150/1‑90 AAGTTGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGC > 1:167673/1‑90 TGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCG > 1:276853/1‑60 TGGCAGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCG < 2:276853/60‑1 AGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAA < 2:157465/59‑1 AGCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAA > 1:157465/1‑59 GCATCACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTA < 1:129949/90‑1 CACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTT < 1:388795/90‑1 ACCTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTG < 2:168624/90‑1 AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/287024‑287112‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTG > NZ_CP009273/481716‑481802 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |