| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 481724 | 3 (0.140) | 15 (0.720) | 12/166 | 0.5 | 83.3% | coding (508/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR |
| ? | NZ_CP009273 | = 1046001 | NA (NA) | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH | |||||
TATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCT > NZ_CP009273/481636‑481808 | tataGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTg > 2:269842‑M1/1‑89 (MQ=255)gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGCGCGGCta > 2:153418‑M2/81‑90 (MQ=255) aCAAACGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatg > 1:556562‑M1/1‑83 (MQ=255) aaaCGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgac < 1:589159‑M1/90‑10 (MQ=255) aCGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactc < 2:513312‑M1/90‑12 (MQ=255) gTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactcca < 2:399172‑M1/90‑14 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCt < 1:153418‑M2/22‑1 (MQ=255) gaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATgg > 2:577933‑M2/64‑90 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGa < 1:45096‑M2/28‑1 (MQ=255) cATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactccaacttatt > 1:448038‑M1/1‑70 (MQ=255) ttGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGaaaa > 1:605618/1‑90 (MQ=255) aaGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactccaacttattgatagtgttt < 1:539137‑M1/90‑31 (MQ=255) gCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGATATATTTCCGGCCTGATGGAAAACTGGCTCttt < 2:605618/90‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCttt > 1:459295‑M2/50‑90 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCttt > 2:388795‑M2/50‑90 (MQ=255) gAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactccaacttattgatagtgttttatg > 1:334893‑M1/1‑56 (MQ=255) gAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactccaacttattgatagtgttttatg > 1:8572‑M1/1‑56 (MQ=255) gAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactccaacttattgatagtgttttatg > 1:293585‑M1/1‑56 (MQ=255) gAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGc > 1:361962/1‑90 (MQ=255) tGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactcca > 1:317180‑M1/1‑48 (MQ=255) tGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTggtaatgactcca < 2:317180‑M1/61‑14 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGccc > 2:513075‑M2/39‑83 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGccc < 1:513075‑M2/45‑1 (MQ=255) taaatcagtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTaa < 1:577933‑M2/64‑1 (MQ=255) cgcgTCGCGCAGCAATTATTATGCGCGGCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc > 1:67217‑M1/1‑30 (MQ=255) gtaagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAaagaa > 2:318150‑M2/20‑90 (MQ=255) aagttggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGc > 1:167673‑M2/18‑90 (MQ=255) tggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCg < 2:276853‑M2/47‑1 (MQ=255) tggcagcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCg > 1:276853‑M2/14‑60 (MQ=255) agcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCaa < 2:157465‑M2/50‑1 (MQ=255) agcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCaa > 1:157465‑M2/10‑59 (MQ=255) gcatcaccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTa < 1:129949‑M2/82‑1 (MQ=255) caccTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGtt < 1:388795‑M2/86‑1 (MQ=255) accTGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTg < 2:168624‑M2/87‑1 (MQ=255) tGCGCGGCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga > 2:68187‑M1/1‑9 (MQ=255) gcgGCTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaa > 1:505681‑M1/1‑6 (MQ=255) | TATAGAACAAACGTTAAAACATTGTATTGAAGCGAAAATGTTGCCTGCGGATTTAATGACGCGTCGCGCAGCAATTATTATGCGCGGCTATATTTCCGGCCTGATGGAAAACTGGCTCTTTGCCCCGCAATCTTTTGATCTTAAAAAAGAAGCCCGCGATTACGTTGCCATCT > NZ_CP009273/481636‑481808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |