| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,213,525 | 0 | C | T | 57.1% | ‑3.4 / 12.3 | 14 | R11K (AGA→AAA) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| Reads supporting (aligned to +/- strand): ref base C (0/6); new base T (8/0); total (8/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGT > NZ_CP009273/4213442‑4213604 | cGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGGTTTTTgtccc > 2:151413/1‑86 (MQ=255) aTCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTTCCCCCGttt > 2:208045/1‑90 (MQ=255) cACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGTTTTCTGCCGCGTTTcgcg < 1:201326/90‑1 (MQ=255) aGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGTTTTCTGCCGCGTTTCGCGGGAATg < 1:342767/90‑1 (MQ=255) aGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGGTTTTTTCCGCGGTTTGCGGGGATg > 1:391802/1‑90 (MQ=255) aaTTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGGTTTTTTCCGCGGTTCGCGGGGATgggg > 2:224963/1‑89 (MQ=255) aTTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGTTTTCTGCCGCGTTTCGCGGGAATGGGTg < 1:224963/90‑1 (MQ=255) aCGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGGTTTTTTCCGCGGTTCGCGGGGAGGGGGGGGGCCATGaa > 2:190843/1‑89 (MQ=255) cgcgTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGTTTTTTGCCGCGGTTCGCGGGGATGGGGGCGACCATGACa > 1:221253/1‑90 (MQ=255) tAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGtctc < 2:318959/90‑1 (MQ=255) tGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGGTTTTTGCCGCGTTTTGCGGGGAAGGGGGGGGCCATGACAGGCTCttttttt > 2:491205/1‑89 (MQ=255) tGGTGCGGTGGCAACGGC‑GGGGTTTTTGCCGCGTTTCGCGGGAATGGGGGGGACCATGACAGTCTCTTTTTTTTTTATCGTGGGAAtcat > 1:310183/1‑90 (MQ=255) ggc‑ggGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGt < 1:190843/90‑1 (MQ=255) ggc‑ggGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGt < 1:326351/90‑1 (MQ=255) | CGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGC‑GGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGT > NZ_CP009273/4213442‑4213604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |