| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2869985 | 48 (1.010) | 3 (0.060) | 3/166 | 3.5 | 6.0% | coding (46/1038 nt) | iap | alkaline phosphatase isozyme conversion aminopeptidase |
| ? | NZ_CP009273 | 2869990 = | 46 (0.980) | coding (51/1038 nt) | iap | alkaline phosphatase isozyme conversion aminopeptidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCGGTAAAAAAATTTGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGG > NZ_CP009273/2869902‑2870076 | ggCGGTAAAAAAATTTGCATGGGATTTTAGGACTCACTATGTTTTCCGCATTGCGCCACCGTAACGCTGCCCTGGCGCTCGGCGGTTGCt > 1:274760/1‑90 (MQ=255) gCGGTAAAAAAATTTGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCtt < 1:647600/90‑1 (MQ=255) cGGTAAAAAAAATTGCATGGGATTTAAGGACTCACTATGTTTTTCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCtct > 1:942196/1‑88 (MQ=255) ggTAAAAAAATTTTCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCtttt > 1:782605/1‑89 (MQ=255) gTAAAAAAATTTGCATGGGATTTTAGGACTCACTATGTTTTTCGCATTGCGCCACCGTACCGCTGCCCTGGGGCTCGGCGGTTGCttttt > 1:1268986/1‑88 (MQ=255) aaaaaaaTTTGCATGGGATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATtc > 1:552979/1‑90 (MQ=255) aaaTTTGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTccc < 1:1010078/90‑1 (MQ=255) aaaTTTGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTccc < 1:627073/90‑1 (MQ=255) ttGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTa > 1:757449/1‑90 (MQ=255) tGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTac < 1:1107959/90‑1 (MQ=255) ggTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGcc < 2:1224041/90‑1 (MQ=255) gTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCt > 2:1093853/1‑90 (MQ=255) aTTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCg < 2:489584/90‑1 (MQ=255) ttAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTc < 1:1097020/90‑1 (MQ=255) aCTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTaa > 2:259624/1‑90 (MQ=255) aCTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTaa > 2:1296522/1‑90 (MQ=255) aCTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTaa > 1:43468/1‑90 (MQ=255) aCTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTaa > 2:889966/1‑90 (MQ=255) aCTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTaa > 1:59205/1‑90 (MQ=255) aCTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTaa > 1:750704/1‑90 (MQ=255) cTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCg > 2:1200856/1‑77 (MQ=255) cTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCg < 1:1200856/77‑1 (MQ=255) tCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCttt > 1:1083141/1‑48 (MQ=255) tCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCttt < 2:1083141/48‑1 (MQ=255) tCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGAtttt > 1:595993/1‑90 (MQ=255) ttGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAt > 1:1149243/1‑90 (MQ=255) ttGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAAt > 1:666826/1‑90 (MQ=255) gcgcCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCg > 2:864077/1‑61 (MQ=255) gcgcCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCg < 1:864077/61‑1 (MQ=255) gcgcCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATAc > 1:1050435/1‑90 (MQ=255) gcgcCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGCCCCCTAAACCTGGCGATTTTGCTAATat > 1:871151/1‑89 (MQ=255) gcCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTc < 2:1122586/90‑1 (MQ=255) ccGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTAtt > 2:1096806/1‑37 (MQ=255) ccGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTAtt < 1:1096806/37‑1 (MQ=255) gtcccGTTGCCCTGCAGCTCGGCGTATGCTTTATTCTCCCCGTGCACGCCTCGTCTCCTAATCCTGGCGATTTTGCCAATACTCAGGCAc < 1:324892/87‑1 (MQ=255) gTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCAc < 2:986818/90‑1 (MQ=255) gTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCAc < 2:666826/90‑1 (MQ=255) gTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCAc > 1:242470/1‑90 (MQ=255) gTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCAc < 1:48367/90‑1 (MQ=255) ccGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGAc < 2:1321616/90‑1 (MQ=255) ccGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGAc < 1:640150/90‑1 (MQ=255) gCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACat < 1:1215172/90‑1 (MQ=255) tGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACatat > 2:105463/1‑90 (MQ=255) tGCCCTGGCGCTCGGC‑‑‑‑GCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGc > 1:312390/1‑77 (MQ=255) tGCCCTGGCGCTCGGC‑‑‑‑GCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGc < 2:312390/77‑1 (MQ=255) gCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATAtt > 2:1347810/1‑90 (MQ=255) tATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCgg < 2:242470/90‑1 (MQ=255) aTGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCggg < 2:59205/90‑1 (MQ=255) aTGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCggg < 2:714806/90‑1 (MQ=255) | GGCGGTAAAAAAATTTGCATGGTATTTAAGGACTCACTATGTTTTCCGCATTGCGCCACCGTACCGCTGCCCTGGCGCTCGGCGTATGCTTTATTCTCCCCGTACACGCCTCGTCACCTAAACCTGGCGATTTTGCTAATACTCAGGCACGACATATTGCTACTTTCTTTCCGGG > NZ_CP009273/2869902‑2870076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |