Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1159054	1159067	14	2 [1]	[0] 2	thiK	thiamine kinase

CCGTGACTGGATGGTAGTCGACTATCTGCCCGGCGCGGTAAAAACGTATTTGCCGGATACCAACGAACTGGCAGGCTTGCTGTATTATCTACATCAACAACC  >  NZ_CP009273/1158964‑1159065                                                                                          |             ccGTGACTGGATGGTAGTCGACTATCTGCCCGGCGCGGTAAAAACGTATTTGCCGGATACCAACGAACTGGCAGGCTTGGTGGATTATCt              >  2:473010/1‑90 (MQ=255)             ggTAGTCGACTATCTGCCCGGCGCGGTAAAAACGTATTTGCCGGATTCCAACGAACTGGCAGGCTTGCTGTATTATCTACATCAACAAcc  <  2:447910/90‑1 (MQ=255)                                                                                          |             CCGTGACTGGATGGTAGTCGACTATCTGCCCGGCGCGGTAAAAACGTATTTGCCGGATACCAACGAACTGGCAGGCTTGCTGTATTATCTACATCAACAACC  >  NZ_CP009273/1158964‑1159065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑