Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779409	2779450	42	2 [1]	[1] 2	BW25113_RS13825/BW25113_RS26005	tRNA‑Ile/alpha‑amylase family glycosyl hydrolase

CTAATAATATAACTTTATTACATTAGCTGAAGAGTTTTCGCATCATTATGATATCTGTTACTTTTCACTCCATAAAAATAAACTTCGTATAGCAATATATTCTTTCATAGA  >  NZ_CP009273/2779430‑2779540                      |                                                                                          cTAATAATATAACTTTATTACATTAGCTGAAGAGTTTTCGCATCATTATGATATCTGTTACTTTTCACTCCATAAAAATAAACTTCGtat                       <  2:425436/90‑1 (MQ=255)                      aTTAGCTGAAGAGGTTTCGCATCATTATGATATCTGTTACTTTTCACTCCATAAAAATAAACTTCGTATAGCAATATATTCTTTCATAGa  >  1:247960/1‑90 (MQ=255)                      |                                                                                          CTAATAATATAACTTTATTACATTAGCTGAAGAGTTTTCGCATCATTATGATATCTGTTACTTTTCACTCCATAAAAATAAACTTCGTATAGCAATATATTCTTTCATAGA  >  NZ_CP009273/2779430‑2779540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑