| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 29 (1.340) | 19/164 | 0.2 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
CTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1972672‑1972751‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCT < NZ_CP009273/2283592‑2283506 CTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCG > 2:542517/1‑90CTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCG > 1:261255/1‑90 CGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAA > 1:512495/1‑90 CACATACAACGGAGGGGGGCTGCGACTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT > 1:326164/1‑90 ACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTG > 1:161995/1‑90 ACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATA > 2:361858/1‑90 GCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATG > 2:10752/1‑90 TGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGTCCCCTGATATGAGATCATGT > 2:386508/1‑90 TTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATC > 1:259680/1‑90 AATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGC < 2:261255/90‑1 GCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 1:586847/1‑90 GCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 2:586847/90‑1 GCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 1:558016/1‑90 GCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 1:361858/90‑1 GCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGA < 1:393349/85‑1 GCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGA > 2:393349/1‑85 GCGTGATGCAGATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAAAAAGC‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 2:538253/90‑1 GATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAA > 2:185572/1‑42 GATCACACAAAACACTCAATTACTTAAGGAAGGTGCGAACAA < 1:185572/42‑1 AAAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG < 1:498818/90‑1 AAACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA > 2:165553/1‑90 AACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG < 2:358635/88‑1 AACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG > 1:358635/1‑88 AACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 1:38455/1‑70 AACACTCAATTACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 2:38455/70‑1 ACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA > 2:308523/1‑65 ACTTAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA < 1:308523/65‑1 TAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCT > 1:237827/1‑90 TAAGGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCT > 2:586229/1‑90 CTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1972672‑1972751‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGT‑CCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCT < NZ_CP009273/2283592‑2283506 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |