| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 14 (0.640) | 11/164 | 0.6 | 82.3% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3630786 | 3 (0.140) | intergenic (‑16/‑216) | yhiN/pitA | NAD(P)/FAD‑dependent oxidoreductase/inorganic phosphate transporter PitA | |||||
AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282474‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTATGTTCTGTTCTGCGCTGG < NZ_CP009273/3630786‑3630707 AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGC < 2:252799/90‑1AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGC < 2:400054/90‑1 AAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCA > 2:344319/1‑90 AAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCAT < 1:41945/90‑1 GACTGAGTCAGCCGAGAAGAATCTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGG > 1:442934/1‑90 CTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCAACTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCG < 1:315607/90‑1 CGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGC < 1:54380/90‑1 GAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGG > 1:268377/1‑90 AGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTA < 2:408968/90‑1 AGAATTTCCCCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTA < 2:50881/90‑1 CCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCAT < 1:643595/55‑1 CCGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCAT > 2:643595/1‑55 CGCTTATTCGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTATGTTCTGTTC < 2:406353/90‑1 CGCACCTTCCCTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTATGTTCTGTTCTGCGCTGG < 2:268377/90‑1 AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282474‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGAGGAGCGCAACGTGGAAAGGTTTGATGCCATTATTATAGGCGCTGGTGCGGCGGGTATGTTCTGTTCTGCGCTGG < NZ_CP009273/3630786‑3630707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |