Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	578921	579059	139	3 [1]	[0] 2	BW25113_RS26085/appY	tail fiber assembly protein/DNA‑binding transcriptional activator AppY

GGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTT  >  NZ_CP009273/578861‑578950                                                            |                               ggTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACttt  <  1:162604/90‑1 (MQ=255)                 gCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATaaaa                                <  1:192869/44‑1 (MQ=255)                 gCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATaaaa                                >  2:192869/1‑44 (MQ=255)                                                            |                               GGTTGACATATATATAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGCATAGTAAGCGTTGAAAAATGTAACTTT  >  NZ_CP009273/578861‑578950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑