Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1539292	1539295	4	2 [0]	[0] 2	BW25113_RS07710	leucine‑rich repeat domain‑containing protein

TATTATGGGATAGATCCAGCAGTAAGAGTTCATTTTTATTACCTGCAACAATATCAGTTAATT  >  NZ_CP009273/1539296‑1539358 |                                                               tattatGGGATAGATCCAGCAGTAAGAGTTCATTTTTATTACCTGCAACAATATCAGTTAAtt  >  1:240604/1‑63 (MQ=255) tattatGGGATAGATCCAGCAGTAAGAGTTCATTTTTATTACCTGCAACAATATCAGTTAAtt  <  2:240604/63‑1 (MQ=255) |                                                               TATTATGGGATAGATCCAGCAGTAAGAGTTCATTTTTATTACCTGCAACAATATCAGTTAATT  >  NZ_CP009273/1539296‑1539358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑