Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 3635994 3636109 116 2 [1] [1] 4 rsmJ 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ

TCCGCATCCGCATAACCACGCGCCAGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGCATCGCGCCCAAGT  >  NZ_CP009273/3636080‑3636199
                              |                                                                                         
tccgcatccgcaTAACCACGCGCCAGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACt                                >  2:61924/1‑90 (MQ=255)
                              tcgtcgAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTg                               >  1:221344/1‑61 (MQ=255)
                              tcgtcgAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTg                               <  2:221344/61‑1 (MQ=255)
                              tcgtcgAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCCCACGCGGCAGCCGACTGAAGCCAGTACAAAGGCATCGCGCCCAAGt  <  2:233021/90‑1 (MQ=255)
                              |                                                                                         
TCCGCATCCGCATAACCACGCGCCAGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGCATCGCGCCCAAGT  >  NZ_CP009273/3636080‑3636199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: