New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | = 2283591 | NA (NA) | 17 (0.950) | 14/162 | 0.2 | 100% | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
? | NZ_CP009273 | = 3512441 | 0 (0.000) | intergenic (‑18/+383) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ |
CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2283503‑2283591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAG < NZ_CP009273/3512441‑3512355 CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 2:378076/90‑1 CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 1:419420/90‑1 GGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:232147/90‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGA > 2:179788/1‑90 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGA > 2:173998/1‑90 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAA < 1:173998/90‑1 GTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGC < 1:179788/90‑1 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAAT < 2:175373/90‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGGACCGAAAAAATGGCAGAGAAACGCAATAT > 1:342974/1‑90 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC > 2:76625/1‑90 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC > 2:373200/1‑90 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGG < 1:206215/90‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATG < 1:516767/90‑1 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATG > 1:336090/1‑90 CTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGC < 1:405789/90‑1 TATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGA > 1:173143/1‑90 GCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGC < 2:373101/90‑1 ACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGC < 2:336090/90‑1 TTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAG > 2:472638/1‑90 CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2283503‑2283591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAG < NZ_CP009273/3512441‑3512355 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |