| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3629246 | 0 (0.000) | 16 (0.890) | 12/164 | 0.4 | 100% | coding (1046/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645396 = | NA (NA) | pseudogene (746/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
TTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAAC > NZ_CP009273/3629157‑3629326 | ttttATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTaa > 2:86877/1‑90 (MQ=255) ttATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAgg < 2:366656‑M1/90‑3 (MQ=255) ttCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaa > 2:495917‑M1/1‑85 (MQ=255) ttCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaa < 1:495917‑M1/89‑5 (MQ=255) ttCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaa > 2:196485‑M1/1‑81 (MQ=255) ttCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaa < 1:196485‑M1/85‑5 (MQ=255) gggAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttc < 2:31411‑M1/90‑31 (MQ=255) gCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactc > 1:199595‑M1/1‑49 (MQ=255) aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtca > 2:216244‑M1/1‑44 (MQ=255) aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttc > 1:58373‑M1/1‑44 (MQ=255) aCGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttc < 2:58373‑M1/74‑31 (MQ=255) gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 1:39035‑M1/1‑39 (MQ=255) gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 2:485707‑M1/1‑39 (MQ=255) tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:199595‑M1/90‑54 (MQ=255) cAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct > 1:436277‑M1/1‑34 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:481536‑M1/1‑29 (MQ=255) gTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc > 1:166000‑M1/1‑10 (MQ=255) | TTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAAC > NZ_CP009273/3629157‑3629326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |