Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	578977	579139	163	2 [0]	[1] 2	[appY]	[appY]

ATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACAACA  >  NZ_CP009273/578924‑578976                                                     | aTAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAacaaca  <  1:72324/53‑1 (MQ=255) aTAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAacaaca  >  2:72324/1‑53 (MQ=255)                                                     | ATAGTAAGCGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAAAACAACA  >  NZ_CP009273/578924‑578976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑