Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3794251	3794257	7	2 [0]	[0] 2	rfaY	lipopolysaccharide core heptose(II) kinase RfaY

TTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCA  >  NZ_CP009273/3794258‑3794297 |                                        ttGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCa  <  1:460353/40‑1 (MQ=255) ttGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCa  >  2:460353/1‑40 (MQ=255) |                                        TTGAGGTACTTTGAATTGTTTTCATCGGTAAAAACAACCA  >  NZ_CP009273/3794258‑3794297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑