| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,698,298 | 0 | G | T | 54.5% | 7.6 / 15.1 | 11 | H90N (CAT→AAT) | ydgJ | oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base G (4/1); new base T (0/6); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCGCGCTTGTGACAGTGTCACGGTAAAGGG‑TTT‑ATCAACGACCACATGTTTACCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGGTGTAGGAATGACAATCAGGTCT > NZ_CP009273/1698251‑1698371 | tcGCGCTTGTGACAGTGTCACGGTAAAGGG‑TTT‑ATCAACGACCACATGTTTACCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGt > 2:371079/1‑90 (MQ=255) gcgtTTGTGACAGTGCCA‑GGTAAAGGGTTTT‑ATCACCGACAATTTTTTTCCCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTAt < 2:489270/90‑1 (MQ=255) gcgcTTGTGACAGTGTCACGGTAAAGGG‑TTT‑ATCAACGACCACATGTTTACCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTAt > 2:338905/1‑90 (MQ=255) tgtgAATGTGACACGGAAAGGGT‑TTT‑ATCAACGACCTCTTGTTTCCCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTg < 1:338905/90‑1 (MQ=255) aGTGTCACGGTAAAGGG‑TTT‑ATCAACGACCACATGTTTACCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGgtgtc > 1:489270/1‑89 (MQ=255) agggaaaGGG‑TTTAATAAACGCCCACTTTTTTCCCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGGTGTAGGAATg < 2:12572/86‑1 (MQ=255) aaGGG‑TTT‑ACCACCGACCACTTTTTTCCCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGGTGTAGGAATGACAATc < 2:520479/90‑1 (MQ=255) ttt‑ATCAACGACCACATGTTTACCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGGTGTAGGAATGACAATCAGGTc > 1:54263/1‑90 (MQ=255) ttt‑AACACCGACCAAATTTTTCCCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGGTGTAGGAATGACAATCAGGTc < 2:461488/90‑1 (MQ=255) tt‑ACCAACGCCCACATTTTTACCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGGTGTAGGAATGACAATCAGGTCt < 1:185470/90‑1 (MQ=255) tt‑AACAACCACCACTTTTTTCCCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGGTGTAGGAATGACAATCAGGTCt < 1:371079/90‑1 (MQ=255) | TCGCGCTTGTGACAGTGTCACGGTAAAGGG‑TTT‑ATCAACGACCACATGTTTACCCGCCTCAAGCGCCGCTTTGGCTAACGGGAAATGGGTATCGTTGGGTGTAGGAATGACAATCAGGTCT > NZ_CP009273/1698251‑1698371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |