| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,576 | A→C | D67A (GAC→GCC) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,576 | 0 | A | C | 100.0% | 58.4 / NA | 16 | D67A (GAC→GCC) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (9/7); total (9/7) | |||||||||||
GCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGG > NZ_CP009273/1613494‑1613660 | gcgGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGa > 1:201834/1‑90 (MQ=255) tttAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGAcc < 2:205446/90‑1 (MQ=255) aGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTggg < 1:99486/76‑1 (MQ=255) aGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTggg > 2:99486/1‑76 (MQ=255) ctctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTggg < 1:260076/71‑1 (MQ=255) ctctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTggg > 2:260076/1‑71 (MQ=255) ctctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGTAGCACTGAcc < 2:486963/81‑1 (MQ=255) ctctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGAcc > 1:486963/1‑81 (MQ=255) ctctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGACCCGTATGCTg > 1:465610/1‑90 (MQ=255) ctgctctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGACCCGTATGCTGGa > 1:515875/1‑90 (MQ=255) ctATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGACCCGTATGCTGGATCGcc < 2:201834/90‑1 (MQ=255) cggcgTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAg > 1:96426/1‑90 (MQ=255) gtgtATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTg < 2:465610/90‑1 (MQ=255) ggTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGACCCg > 1:373321/1‑48 (MQ=255) ggTTGAACTGAAAAAGGTATTGTCGGTCGCCCTGGGAGCACTGACCCg < 2:373321/48‑1 (MQ=255) ggtcgCCCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCgcgg > 2:152391/1‑90 (MQ=255) | GCGGCACAGTTTAAGGTGCTCTGCTCTATCCGCTGCGCGGCGTGTATTACTCCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGG > NZ_CP009273/1613494‑1613660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |