New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 4047497110 (1.060)3 (0.030) 3/148 4.5 3.3% coding (1142/1410 nt) glnG nitrogen regulation protein NR(I)
?NZ_CP009273 = 4047517 79 (0.850)coding (1122/1410 nt) glnG nitrogen regulation protein NR(I)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 114 total aligned reads displayed.

CTGCCCACTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACGC  >  NZ_CP009273/4047408‑4047585
                                                                                         |                                                                                        
ctgCCCTCTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCa                                                                                          <  1:1085847/90‑1 (MQ=255)
 tgCCCACTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCaa                                                                                         >  1:2785611/1‑90 (MQ=255)
 tgCCCACTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCaa                                                                                         >  2:1197117/1‑90 (MQ=255)
   cccACTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAAt                                                                                       >  2:2701646/1‑90 (MQ=255)
      attGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    >  2:2339982/3‑90 (MQ=255)
      aCTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    >  2:2626263/1‑90 (MQ=255)
      aCTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    <  2:2333127/90‑1 (MQ=255)
      aCTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    >  1:44141/1‑90 (MQ=255)
      aCTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    <  2:610114/90‑1 (MQ=255)
      aCTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    >  1:815002/1‑90 (MQ=255)
      aCTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    <  1:674123/90‑1 (MQ=255)
      aCTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCCCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    >  1:2901983/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  1:990970/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  1:2870536/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  1:52745/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  1:2079081/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  1:2013296/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  2:389456/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  2:1803176/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  2:2458755/1‑90 (MQ=255)
        tGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCACAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGa                                                                                  >  2:2045850/1‑90 (MQ=255)
          cgcAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAAt                                                                                <  2:876067/90‑1 (MQ=255)
          cgcAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAAt                                                                                <  1:1803176/90‑1 (MQ=255)
            cAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa                                                                              >  2:232980/1‑90 (MQ=255)
            cAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCa                                                                              <  1:2718672/90‑1 (MQ=255)
              agaagCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                                            <  1:538620/90‑1 (MQ=255)
              agaagCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                                            <  2:101713/90‑1 (MQ=255)
              agaagCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                                            <  2:1075046/90‑1 (MQ=255)
              agaagCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                                            <  2:1479406/90‑1 (MQ=255)
              agaagCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                                            <  2:1797834/90‑1 (MQ=255)
              agaagCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                                            <  1:1459321/90‑1 (MQ=255)
              agaagCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAac                                                                            <  2:2751629/90‑1 (MQ=255)
                 agCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt                                                                         >  1:150746/1‑90 (MQ=255)
                 agCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACt                                                                         >  2:285591/1‑90 (MQ=255)
                   cGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    >  2:2559322/1‑77 (MQ=255)
                   cGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    >  2:1338891/1‑77 (MQ=255)
                   cGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    <  1:1338891/77‑1 (MQ=255)
                   cGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCt                                                                                    <  1:2559322/77‑1 (MQ=255)
                   cGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTc                                                                       >  2:2673252/1‑90 (MQ=255)
                   cGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTc                                                                       >  2:1886337/1‑90 (MQ=255)
                   cGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTc                                                                       >  2:1132391/1‑90 (MQ=255)
                   cGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTc                                                                       >  1:2579488/1‑90 (MQ=255)
                    gTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTcc                                                                      <  1:788942/90‑1 (MQ=255)
                    gTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTcc                                                                      >  1:823334/1‑90 (MQ=255)
                           aGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcgg                                                               <  1:874223/90‑1 (MQ=255)
                           aGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcgg                                                               <  2:1237781/90‑1 (MQ=255)
                              tGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                            <  2:2870536/90‑1 (MQ=255)
                                tCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgaac                                                          <  1:2837963/90‑4 (MQ=255)
                                 ccGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                         <  2:160545/90‑1 (MQ=255)
                                 ccGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCa                                                         >  2:2748379/1‑90 (MQ=255)
                                   ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  1:2355393/90‑1 (MQ=255)
                                   ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  2:1391246/90‑1 (MQ=255)
                                   ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  1:1776651/90‑1 (MQ=255)
                                   ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  1:2626263/90‑1 (MQ=255)
                                   ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  2:2855348/90‑1 (MQ=255)
                                   ggTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  2:578562/90‑1 (MQ=255)
                                       gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCa                                                                                          <  1:2655955/51‑1 (MQ=255)
                                       gCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCa                                                                                          >  2:2655955/1‑51 (MQ=255)
                                                      tctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                    <  1:1168052/90‑1 (MQ=255)
                                                       ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCaa                                                                                         <  2:2580127/36‑1 (MQ=255)
                                                       ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCaa                                                                                         >  1:2580127/1‑36 (MQ=255)
                                                       ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAggg                                   >  2:1518201/1‑89 (MQ=255)
                                                       ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAggg                                   >  1:1851808/1‑89 (MQ=255)
                                                       ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                   <  1:265741/90‑1 (MQ=255)
                                                       ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                   >  2:220437/1‑90 (MQ=255)
                                                       ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                   >  1:2844894/1‑90 (MQ=255)
                                                       ctcCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGgt                                   <  1:414903/90‑1 (MQ=255)
                                                           gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                    >  2:453023/1‑85 (MQ=255)
                                                           gCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAgg                                    <  1:453023/85‑1 (MQ=255)
                                                            cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       >  1:258506/1‑65 (MQ=255)
                                                            cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  2:258506/65‑1 (MQ=255)
                                                            cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       >  1:298657/1‑65 (MQ=255)
                                                            cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGtttt                              >  2:1039701/1‑90 (MQ=255)
                                                            cAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGGGtttt                              >  1:2309860/1‑90 (MQ=255)
                                                                 gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                            >  1:1983024/1‑55 (MQ=255)
                                                                 gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcgg                                                            <  2:1983024/55‑1 (MQ=255)
                                                                 gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGTCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGc                         >  2:559382/1‑90 (MQ=255)
                                                                 gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  2:1441055/60‑1 (MQ=255)
                                                                 gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       >  1:1441055/1‑60 (MQ=255)
                                                                 gTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGGGTTTTCCAGc                         >  2:1268941/1‑90 (MQ=255)
                                                                   tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTg                       >  2:2445878/1‑90 (MQ=255)
                                                                   tGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTg                       >  2:2940131/1‑90 (MQ=255)
                                                                      ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  2:553795/55‑1 (MQ=255)
                                                                      ttCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       >  1:553795/1‑55 (MQ=255)
                                                                       tCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGgcgc                   <  1:2295102/90‑1 (MQ=255)
                                                                         aaaCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCAc                 <  1:2823839/90‑1 (MQ=255)
                                                                         aaaCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCAc                 <  2:150746/90‑1 (MQ=255)
                                                                         aaaCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGGGTTTTCCAGCTGGCGCAc                 >  2:2414649/1‑90 (MQ=255)
                                                                          aaCAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACg                <  1:131011/90‑1 (MQ=255)
                                                                              gTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcg                                                             <  2:200261/41‑1 (MQ=255)
                                                                              gTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCcggcg                                                             >  1:200261/1‑41 (MQ=255)
                                                                              gTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGc            >  1:838785/1‑90 (MQ=255)
                                                                                tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       >  2:1988469/1‑45 (MQ=255)
                                                                                tCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATc                                                       <  1:1988469/45‑1 (MQ=255)
                                                                                    cGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc      <  1:2063535/90‑1 (MQ=255)
                                                                                    cGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc      <  1:623656/90‑1 (MQ=255)
                                                                                    cGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc      <  1:2094189/90‑1 (MQ=255)
                                                                                    cGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGcc      <  1:2339982/90‑1 (MQ=255)
                                                                                      ggCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGCGTTTTCCAGCTGGCGCACGTTGCCTGGCCAc    >  1:1434068/1‑90 (MQ=255)
                                                                                        cAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACGc  <  2:2795799/90‑1 (MQ=255)
                                                                                         |                                                                                        
CTGCCCACTGCGCAAGAAGCGTCGCCCAGCTGTCCGGTTGCATTTGCGAAGTACTCTCCGCAACCGTTGATTCAAACAGTTCGCCGGGCAAATCCTGAATCAACACTTCCTGCCCGGCGGCCATCACCGTTAGCCAGCGGCAGGTGTTTTCCAGCTGGCGCACGTTGCCTGGCCACGC  >  NZ_CP009273/4047408‑4047585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.