Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092733,659,0620CA49.0% 111.9 / 78.2 104A37S (GCG→TCG) gadXacid resistance transcriptional activator GadX
Reads supporting (aligned to +/- strand):  ref base C (43/10);  new base A (0/51);  total (43/61)
Fisher's exact test for biased strand distribution p-value = 6.00e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 106 total aligned reads displayed.

GAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATT  >  NZ_CP009273/3658973‑3659144
                                                                                          |                                                                                  
gAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGc                                                                                    >  1:2680024/1‑90 (MQ=255)
gAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGc                                                                                    <  1:1515623/90‑1 (MQ=255)
  gCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaa                                                                                  <  2:1703524/90‑1 (MQ=255)
  gCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaa                                                                                  <  2:2123661/90‑1 (MQ=255)
  gCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaa                                                                                  <  1:1373027/90‑1 (MQ=255)
  gCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaa                                                                                  <  2:2714716/90‑1 (MQ=255)
    aTCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaa                                                                                >  2:1124535/1‑90 (MQ=255)
    aTCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaa                                                                                  >  2:803835/1‑88 (MQ=255)
    aTCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaa                                                                                  <  1:803835/88‑1 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                               >  2:469086/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                               >  2:2016093/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                               >  2:125743/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                               >  2:880990/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                               >  1:1539924/1‑90 (MQ=255)
     tCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCaaaaa                                                                               >  1:1802100/1‑90 (MQ=255)
      cGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAc                                                                              >  1:1066696/1‑90 (MQ=255)
       gggAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAcc                                                                             >  1:1366449/1‑90 (MQ=255)
        ggAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCa                                                                            <  1:984894/90‑1 (MQ=255)
             aataatGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCa                                                                       >  2:2539501/1‑90 (MQ=255)
                aatGAAGCCGTGTCCCTTGACACGAATAAAAAATTTC‑CAACCCACTTATCTACTCAAATTTGGCTTCCACCCCAAAAAACCAGCTCCCCg                                                                    <  1:1536864/90‑1 (MQ=255)
                     aaGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACAGACTTATCTACTCGAATTTGGCTTTTATCCGCAAAAACCAGGTATCCGCCAtt                                                               >  1:2119328/1‑90 (MQ=255)
                     aaGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCAtt                                                               >  2:2986110/1‑90 (MQ=255)
                     aaGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCAtt                                                               >  1:1776498/1‑90 (MQ=255)
                       gCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAg                                                                           >  1:2421255/1‑76 (MQ=255)
                       gCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaa                                                             >  1:573118/1‑90 (MQ=255)
                       gCGTGTCCCTTGACACGAATAAAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAg                                                                           <  2:2421255/76‑1 (MQ=255)
                         gtgtCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                           >  1:269191/1‑90 (MQ=255)
                         gtgtCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTaaaa                                                           >  1:2291031/1‑90 (MQ=255)
                          ttccccTTGACACGAATAAAAATTTTT‑CAACCCCTTTATCTCCTCAATTTTGGTTTCCACCCGAAAAACCCAGGTCCCCGCCATTAAAAt                                                          <  2:2092066/87‑1 (MQ=255)
                           ttCCCTTTACCAGAAAAAAAAATTTTCCAACACTTTTTCCTTCTCAATTTTGGCTTCCACCCAAAAAACCCAGGCCACCGCCATTAAAAt                                                          <  1:2530404/89‑1 (MQ=255)
                            ccccTTAACACAAATAAAAATTTTT‑CAACACACTTATCTACTCAATTTTGGCTTCCACCCGAAAAACCCAGGTCCCCGCCATTAAAATAg                                                        <  2:2859075/89‑1 (MQ=255)
                             cccTTGACACGAATAAAAAATTTT‑CAACACACTTATCTCCTCGAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGc                                                       <  2:898962/90‑1 (MQ=255)
                             cccTTGACACAAAAAAAAAATTTT‑CAACACACTTATCTACTCAAATTTGGCTTGCACCCGAAAAACCCAGGCCACCGCCATTAAAATAGc                                                       <  1:469512/90‑1 (MQ=255)
                             cccTTAACACGAATAAAAATTTTT‑CAACACCCTTCTCTTCTCAATTTTGGCTTCCATCCGAAAAAACCAGGTCCCCGCCATTAAAATAGc                                                       <  2:2819616/90‑1 (MQ=255)
                               cTTGACACAAAAAAAAAATTTT‑CAACCCCCTTATCTCCTCGATTTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGa                                                     <  1:35548/90‑1 (MQ=255)
                                ttGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGat                                                    >  2:807574/1‑90 (MQ=255)
                                 tGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGata                                                   >  1:120332/1‑90 (MQ=255)
                                 tGACACGAATACAAAAATTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGata                                                   >  2:354664/1‑90 (MQ=255)
                                   acacAAATAAAAATTTTT‑CAACACACTTATCTACTAAAATTTGGCTTGCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATAtt                                                 <  1:371147/90‑1 (MQ=255)
                                    cccaaaTAAAAAATTTT‑CAACACATTTATCTACCAAAATTTGGTTTCCACCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTc                                                <  1:125743/86‑1 (MQ=255)
                                    cacaAATACAAAATTTT‑CAACCCACTTATCTACCCAAATTTGGCTTGCACCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTc                                                <  2:58026/90‑1 (MQ=255)
                                    cacaAATAAAAATTTTT‑CAACACTCTTATCTCCTCGATTTTGGCTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTc                                                <  2:269191/90‑1 (MQ=255)
                                    cacaAATAAAAATTTTT‑CAACACCTTTATCTCCTCGAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTc                                                <  2:1089707/90‑1 (MQ=255)
                                    cacGAATAAAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTc                                                <  2:1066696/90‑1 (MQ=255)
                                      cGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAc                                              >  1:606776/1‑90 (MQ=255)
                                      cGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAc                                              >  1:2184943/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                             >  2:2444094/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                             >  2:521181/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                             >  2:233601/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                             >  2:929228/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                             >  2:35548/1‑90 (MQ=255)
                                       gAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCAcc                                             >  1:1140479/1‑90 (MQ=255)
                                        aaTAAAAAATTTC‑CAACACCCTTATCTACTCGATTTTGGCTTCCATCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCa                                            <  2:1810194/90‑1 (MQ=255)
                                         aaaaaaaaTTTTCCAACCCACTTATCTACTCGATTTTGTCTTCCACCCGAAAAAACCAGGTCCCCGCCATTAAAATAGCGATATTCACCa                                            <  2:2527147/86‑1 (MQ=255)
                                          aaaaaaaTTTT‑AAACACACTTATCTACCCAAATTTGGTTTCCCCCCGCAACACACCGGTCCCCGCCATTAAAATAGCGATATTCACCAtt                                          <  2:2256286/87‑1 (MQ=255)
                                          aaaaaaaTTTC‑CAACCCATTTTTCTCCTCAATTTTGGCTTCCACCCAAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCAtt                                          <  2:2098488/87‑1 (MQ=255)
                                               attttt‑CAACACTCTTATCTCCTCAATTTTGGCTTGCACCCAAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCa                                     <  1:521181/88‑1 (MQ=255)
                                               aaTTTA‑CAACCCCTTTATCTCCTCAATTTTGGCTTCCACCCAAAAAAACCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCa                                     <  1:1135742/90‑1 (MQ=255)
                                                ttttt‑CAACACATTTATCTACTCAATTTTGTCTCCCACCCAAAAAAACAGGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCAt                                    <  1:1374985/89‑1 (MQ=255)
                                                aTTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCAt                                    >  1:228469/1‑90 (MQ=255)
                                                   tt‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGt                                 >  2:2560257/1‑90 (MQ=255)
                                                    t‑CAACCCCCTTATCTCCTCGATTTGGGCTTGCACCCAAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                <  2:387743/90‑1 (MQ=255)
                                                    t‑CAACACTTTTATCTCCTCAATTTTGGCTTCCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                <  1:770044/90‑1 (MQ=255)
                                                    t‑CAACACATTTATCTCCTAAATTTTGGCTTGCACCCAAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                <  1:1221222/90‑1 (MQ=255)
                                                    t‑CAACACACTTATCTACTCGATTTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                <  2:71243/90‑1 (MQ=255)
                                                     taaaCACACTTATCTACTCGATTTTGGCTTGCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                <  2:278359/88‑1 (MQ=255)
                                                     ccaccacatTTATCTACTCAATTTTGGCTTGCCCCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                <  1:2463361/86‑1 (MQ=255)
                                                     ccAACACACTTATCTACTATATTTGGGCTTCCCCCCAAAAAACCCAGGCCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                <  1:1434218/89‑1 (MQ=255)
                                                     caaccacatTTATCTACTCAATTTTGCTTTCCCCCCAAAAAAACCAGCTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                <  1:1843930/86‑1 (MQ=255)
                                                       aaCACCTTTATCTCCTCAATTTTGGCTTCCACCCGAAAAACCCAGGCCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgag                              <  2:1785186/90‑1 (MQ=255)
                                                         cccccTTATCTACTCAATTTTGGTTTCCACCCAAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                            <  1:485889/86‑1 (MQ=255)
                                                         cacatTTATCTCCTCGATTTTGGTTTGCATCCGAAAAAACCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                            <  2:1249883/90‑1 (MQ=255)
                                                         cacatTTATCTACTCGAATTTGGCTTCCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                            <  1:2774530/90‑1 (MQ=255)
                                                         cacacTTATCTACTCAATTTTGGCTTCCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                            <  1:2555544/90‑1 (MQ=255)
                                                          ccttttATCTCCTCAATTTTGGCTTGCACCCGAAAAAACCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                           <  2:1492662/86‑1 (MQ=255)
                                                          ccacTTATCTCCTCGATTTTGGCTTGCATCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                           <  2:606776/89‑1 (MQ=255)
                                                          cagtttATCTACTCGATTTTGGTTTGCACCCAAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                           <  2:2736476/86‑1 (MQ=255)
                                                          acacTTATCTCCTCGATTTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                           <  2:465417/90‑1 (MQ=255)
                                                           cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata                          >  1:49931/1‑90 (MQ=255)
                                                           cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata                          >  1:1859494/1‑90 (MQ=255)
                                                           cacTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAata                          >  1:844447/1‑90 (MQ=255)
                                                            ttttATCTACTCAATTTTGGCTTCCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatat                         <  2:1960517/88‑1 (MQ=255)
                                                            atttATCTCCTCAATTTTGTTTTCCACCCGAAAAACCCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatat                         <  1:724886/88‑1 (MQ=255)
                                                                 tCTACACAATTTTGGCTTCCACCCAAAAAAACCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTa                    <  1:502547/90‑1 (MQ=255)
                                                                     cTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTc                >  2:519842/1‑90 (MQ=255)
                                                                       cGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCtt              >  1:2525562/1‑90 (MQ=255)
                                                                       cGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCtt              >  1:28746/1‑90 (MQ=255)
                                                                       cGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCtg              >  1:2736476/1‑89 (MQ=255)
                                                                             tgccTTCCACCCGAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:692372/87‑1 (MQ=255)
                                                                             tgccTTCCACCCGAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:1690397/87‑1 (MQ=255)
                                                                             tGGTTTGCACCCGAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:1516005/90‑1 (MQ=255)
                                                                             tGGCTTGCACCCGAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:890868/90‑1 (MQ=255)
                                                                             tGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:458025/90‑1 (MQ=255)
                                                                             tGGCTTGCACCAAAAAAAACCGGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  1:2716855/90‑1 (MQ=255)
                                                                             tGGCTTCCACCCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:694402/90‑1 (MQ=255)
                                                                             tGGCTTCCACCCAAAAAACCCGGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:2124349/90‑1 (MQ=255)
                                                                             tGGCTTCCACCCAAAAAACCCAGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:120332/90‑1 (MQ=255)
                                                                             tGGCTTCCACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc        <  2:2055960/90‑1 (MQ=255)
                                                                                   gCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAAtt  >  2:1570713/1‑90 (MQ=255)
                                                                                        cGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCAtt                                          >  2:2328875/1‑45 (MQ=255)
                                                                                          |                                                                                  
GAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTT‑CAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATT  >  NZ_CP009273/3658973‑3659144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑