Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 49,736 A→T intergenic (+105/‑87) kefC → / → folA glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP00927349,7360AT98.2% 449.8 / ‑1.3 114intergenic (+105/‑87)kefC/folAglutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base T (47/65);  total (48/66)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.74e-01

Only 100 of 117 total aligned reads displayed.

CACACTTTACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAT  >  NZ_CP009273/49649‑49818
                                                                                       |                                                                                   
cacaCTTTACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAAttt                                                                                   <  2:533962/90‑1 (MQ=255)
 acacTTTACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAAtttt                                                                                  <  1:2508872/90‑1 (MQ=255)
 acacTTTACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAAtttt                                                                                  <  1:1868020/90‑1 (MQ=255)
  cacTTTACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATtttt                                                                                 >  2:261333/1‑90 (MQ=255)
      ttACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTc                                                                             >  1:1025660/1‑90 (MQ=255)
      ttACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTc                                                                             <  2:244967/90‑1 (MQ=255)
      ttACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTc                                                                             <  1:2018500/90‑1 (MQ=255)
      ttACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTc                                                                             >  1:1221275/1‑90 (MQ=255)
       tACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCa                                                                            >  2:2138231/1‑90 (MQ=255)
        aCAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCGGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCaa                                                                           <  2:427129/90‑1 (MQ=255)
         cAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAc                                                                          >  2:1438625/1‑90 (MQ=255)
            cTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  1:867399/90‑1 (MQ=255)
            cTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  1:2351665/90‑1 (MQ=255)
            cTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  1:1334110/90‑1 (MQ=255)
            cTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  1:1055879/90‑1 (MQ=255)
            cTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  2:337234/90‑1 (MQ=255)
            cTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  1:1438625/90‑1 (MQ=255)
            cTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  1:1581553/90‑1 (MQ=255)
            cTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  1:153265/90‑1 (MQ=255)
             tAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatca                                                                      <  2:963489/90‑1 (MQ=255)
              aaCTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatcat                                                                     >  2:881432/1‑90 (MQ=255)
              aaCTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTCCCTCAAcatcat                                                                     >  2:708888/1‑90 (MQ=255)
                  gtttgtttTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTc                                                                 <  1:1765771/90‑1 (MQ=255)
                   tttgtttttgttTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       >  2:1555665/1‑83 (MQ=255)
                   tttgtttttgttTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  1:1555665/83‑1 (MQ=255)
                    ttgtttttgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGc                                                               >  2:1486165/1‑90 (MQ=255)
                     tgtttttgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCa                                                              >  1:2790005/1‑90 (MQ=255)
                       tttttgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            <  2:636954/90‑1 (MQ=255)
                       tttttgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            <  1:1965453/90‑1 (MQ=255)
                       tttttgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            <  2:2675742/90‑1 (MQ=255)
                       tttttgtttAATTGTAATGCGGCGAGTCCAGGGAGATAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            <  1:1991670/90‑1 (MQ=255)
                        ttttgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCa                                                           >  2:1329488/1‑90 (MQ=255)
                        ttttgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCa                                                           >  2:1437789/1‑90 (MQ=255)
                         tttgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAg                                                          <  1:908820/90‑1 (MQ=255)
                           tgtttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTc                                                        <  2:344056/90‑1 (MQ=255)
                              ttCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTcgac                                                     <  2:3012883/90‑1 (MQ=255)
                                cATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       >  1:2939833/1‑70 (MQ=255)
                                cATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAAcatc                                                                       <  2:2939833/70‑1 (MQ=255)
                                cATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   <  1:2444865/90‑1 (MQ=255)
                                cATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   <  2:1113635/90‑1 (MQ=255)
                                cATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   <  2:440142/90‑1 (MQ=255)
                                cATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   <  1:298694/90‑1 (MQ=255)
                                      aaTGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGttt                                            <  1:55645/90‑1 (MQ=255)
                                      aaTGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGttt                                            <  2:296909/90‑1 (MQ=255)
                                       aTGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTa                                           <  1:1759496/90‑1 (MQ=255)
                                       aTGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTa                                           <  2:2981702/90‑1 (MQ=255)
                                         gcggcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACg                                         >  2:587965/1‑90 (MQ=255)
                                         gcggcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACg                                         <  2:1154329/90‑1 (MQ=255)
                                           ggcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCt                                       <  1:567774/90‑1 (MQ=255)
                                           ggcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCt                                       <  2:2339273/90‑1 (MQ=255)
                                           ggcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCt                                       <  1:2749883/90‑1 (MQ=255)
                                            gcgAGTCCGGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCtt                                      >  1:1469298/1‑90 (MQ=255)
                                            gcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCCCCAGTcgacga                                                   <  1:1888123/78‑1 (MQ=255)
                                            gcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   >  2:1888123/1‑78 (MQ=255)
                                            gcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCtt                                      <  2:2790005/90‑1 (MQ=255)
                                            gcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCtt                                      <  2:2182556/90‑1 (MQ=255)
                                            gcgAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCtt                                      >  2:63123/1‑90 (MQ=255)
                                              gAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTa                                    <  1:632329/90‑1 (MQ=255)
                                              gAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTa                                    <  1:632328/90‑1 (MQ=255)
                                              gAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTa                                    >  2:885942/1‑90 (MQ=255)
                                              gAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTa                                    >  1:1606234/1‑90 (MQ=255)
                                                         gagagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            >  1:458946/1‑56 (MQ=255)
                                                         gagagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            <  2:458946/56‑1 (MQ=255)
                                                         gagagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGc                         >  2:138606/1‑90 (MQ=255)
                                                         gagagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGc                         >  1:2438891/1‑90 (MQ=255)
                                                          agagCTTGGACTCGCCAGCAGAATATAAATTTTTCATCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCg                        >  1:1885104/1‑90 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCt                                                                              >  1:1037546/1‑37 (MQ=38)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCt                                                                              <  2:1037546/37‑1 (MQ=38)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            <  1:1261451/55‑1 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            >  2:2500436/1‑55 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            <  1:2500436/55‑1 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            >  2:1261451/1‑55 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   >  2:2573652/1‑64 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   <  1:2573652/64‑1 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCtt                                      <  2:782941/76‑1 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCtt                                      >  1:782941/1‑76 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCg                        >  2:2367744/1‑90 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCg                        >  2:2414352/1‑90 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCg                        >  1:1928874/1‑90 (MQ=255)
                                                          agagCGTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCg                        >  1:960308/1‑90 (MQ=255)
                                                             gCGTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACa                     >  1:2182969/1‑90 (MQ=255)
                                                               gTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            >  2:697711/1‑50 (MQ=255)
                                                               gTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCAcc                                                            <  1:697711/50‑1 (MQ=255)
                                                               gTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAAt                   >  2:187769/1‑90 (MQ=255)
                                                               gTGGACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAAt                   >  1:2723917/1‑90 (MQ=255)
                                                                 ggACTCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAAttt                 >  1:813777/1‑90 (MQ=255)
                                                                     tCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAAttttttt             >  2:1131295/1‑90 (MQ=255)
                                                                     tCGCCAGCAGAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAAttttttt             >  2:1620809/1‑90 (MQ=255)
                                                                              gAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGaa    <  2:2206788/90‑1 (MQ=255)
                                                                              gAATATAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGaa    <  2:2968720/90‑1 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   <  2:1759246/42‑1 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTcgacga                                                   >  1:1759246/1‑42 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGaaa   >  2:1755795/1‑90 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAt  >  1:2831610/1‑90 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAt  <  2:2777231/90‑1 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAt  >  1:2616410/1‑90 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAt  <  1:881432/90‑1 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAt  <  2:1469298/90‑1 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAt  <  2:249381/90‑1 (MQ=255)
                                                                                atatAAATTTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAt  <  2:9490/90‑1 (MQ=255)
                                                                                       |                                                                                   
CACACTTTACAGCTAACTGTTTGTTTTTGTTTCATTGTAATGCGGCGAGTCCAGGGAGAGAGCGTGGACTCGCCAGCAGAATATAAAATTTTCCTCAACATCATCCTCGCACCAGTCGACGACGGTTTACGCTTTACGTATAGTGGCGACAATTTTTTTTATCGGGAAAT  >  NZ_CP009273/49649‑49818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: