Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 444,519 G→A R527C (CGT→TGT)  cyoB ← cytochrome o ubiquinol oxidase subunit I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP009273444,5190GA99.2% 472.3 / ‑4.5 124R527C (CGT→TGT) cyoBcytochrome o ubiquinol oxidase subunit I
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (55/67);  total (56/68)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01

Only 100 of 124 total aligned reads displayed.

ACGGCAAAGTTATAGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACGGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGC  >  NZ_CP009273/444437‑444603
                                                                                  |                                                                                    
aCGGCAAAGTTATAGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTgg                                                                               >  2:2515162/1‑90 (MQ=255)
 cGGCAAAGTTATAGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTggt                                                                              >  2:476693/1‑90 (MQ=255)
  ggCAAAGTTATAGAACGGAGGCGGGGAAGAGGGTGCCCCCTCCAGCGTACCGCCACCCCACGGGGCGCCAGTCAGGTTACCGTTCTggtc                                                                             >  1:2333824/1‑90 (MQ=255)
     aaaGTTATAGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTggtcgcg                                                                          >  1:1757523/1‑90 (MQ=255)
     aaaGTTATAGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTggtcgcg                                                                          >  2:112746/1‑90 (MQ=255)
      aaGTTATAGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCTCCCCACGGGTCGCCAGTCAGGTCACAGTTCTggtcgcgg                                                                         <  2:2209279/90‑1 (MQ=255)
      aaGTTATAGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTggtcgcgg                                                                         <  1:410712/90‑1 (MQ=255)
          tataGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTggtcgcggtcgc                                                                     >  2:289832/1‑90 (MQ=255)
                  ggAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGaa                                                             >  2:2132849/1‑90 (MQ=255)
                  ggAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGaa                                                             >  1:285/1‑90 (MQ=255)
                  ggAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGaa                                                             >  2:77276/1‑90 (MQ=255)
                  ggAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGaa                                                             >  2:1675138/1‑90 (MQ=255)
                  ggAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGaa                                                             >  1:1154243/1‑90 (MQ=255)
                  ggAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGaa                                                             >  2:1860889/1‑90 (MQ=255)
                  ggAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGGCGCGAATAGaa                                                             >  1:1971732/1‑90 (MQ=255)
                   gAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGaaa                                                            >  1:209122/1‑90 (MQ=255)
                      gCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGt                                                         <  2:1004084/90‑1 (MQ=255)
                      gCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGt                                                         <  1:1196412/90‑1 (MQ=255)
                        ggggAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTAc                                                       <  2:1697596/90‑1 (MQ=255)
                           gAAGAGGTTGCCCACTCCAGCGTACGGCCCCCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATc                                                    <  1:389723/90‑1 (MQ=255)
                             agagGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGt                                                         <  2:1458719/83‑1 (MQ=255)
                             agagGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGt                                                         >  1:1458719/1‑83 (MQ=255)
                                ggTTGCCCACTCCAGCGTACGGCCACCCCACGGGGCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAAt                                               >  1:2852118/1‑90 (MQ=255)
                                   tGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAAc                                            <  1:66641/90‑1 (MQ=255)
                                   tGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGCCGCGGTCGCGAATAGAAACGTACATCTGAATAAc                                            >  1:1719703/1‑90 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  2:1210551/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  1:381872/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  1:343191/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  1:2998729/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  1:2991696/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  1:289832/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  2:2014380/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  1:1675138/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      >  2:2813137/1‑90 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  2:1043388/90‑1 (MQ=255)
                                         cTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  2:1757523/90‑1 (MQ=255)
                                              gCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAAt                                                                 <  2:1992955/58‑1 (MQ=255)
                                              gCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAAt                                                                 >  1:1992955/1‑58 (MQ=255)
                                              gCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGaa                                 >  1:890656/1‑90 (MQ=255)
                                              gCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGaa                                 <  1:89117/90‑1 (MQ=255)
                                                  aCGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAcc                             >  2:2534777/1‑90 (MQ=255)
                                                  aCGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAcc                             <  1:388122/90‑1 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTc                                                                                  >  1:2079645/1‑36 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTc                                                                                  <  2:2079645/36‑1 (MQ=39)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      <  1:1009984/80‑1 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCa                                      >  2:1009984/1‑80 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAccc                            >  1:2774443/1‑90 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAccc                            >  2:2571571/1‑90 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAccc                            >  2:1800993/1‑90 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAccc                            >  1:2407025/1‑90 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAccc                            >  1:1736033/1‑90 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAcc                             >  1:2548257/1‑89 (MQ=255)
                                                   cGGCCACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATAcc                             <  2:2548257/89‑1 (MQ=255)
                                                       cACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcg                        <  1:2515162/90‑1 (MQ=255)
                                                       cACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcg                        <  1:85601/90‑1 (MQ=255)
                                                       cACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcg                        <  1:944711/90‑1 (MQ=255)
                                                       cACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcg                        <  1:2687177/90‑1 (MQ=255)
                                                       cACCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcg                        <  1:476693/90‑1 (MQ=255)
                                                        aCCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcgc                       >  2:34972/1‑90 (MQ=255)
                                                        aCCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcgc                       >  1:1215299/1‑90 (MQ=255)
                                                        aCCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcgc                       >  2:677841/1‑90 (MQ=255)
                                                        aCCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcgc                       >  2:2634380/1‑90 (MQ=255)
                                                        aCCCCACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcgc                       >  2:1597581/1‑90 (MQ=255)
                                                          cccACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCaa                     <  2:209122/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACGGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  1:2142527/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  2:1205650/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  2:1154243/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  1:2281206/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  2:739796/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  2:2774443/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  2:765846/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  1:1486685/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  1:77276/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  1:677841/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  1:1421645/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  1:562438/90‑1 (MQ=255)
                                                            cACGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCACAGAATACCCAGCGCAATc                   <  1:2387278/90‑1 (MQ=255)
                                                             aCGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   >  1:2122215/1‑89 (MQ=255)
                                                             aCGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATc                   <  2:2122215/89‑1 (MQ=255)
                                                             aCGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCa                  >  2:1429537/1‑90 (MQ=255)
                                                             aCGGGTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCa                  >  1:4313/1‑90 (MQ=255)
                                                               gggTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGt                <  1:112746/90‑1 (MQ=255)
                                                               gggCCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACTCAGCGCAATCAGt                <  1:2625266/90‑1 (MQ=255)
                                                                ggTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCaa                     <  1:2072537/84‑1 (MQ=255)
                                                                ggTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTa               <  2:715755/90‑1 (MQ=255)
                                                                 gTCGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGa                                                                   <  2:2853924/37‑1 (MQ=38)
                                                                   cGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGt                                                         <  2:1667624/45‑1 (MQ=255)
                                                                   cGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTg            >  2:1743477/1‑90 (MQ=255)
                                                                   cGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTg            >  2:772774/1‑90 (MQ=255)
                                                                   cGCCAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGGACTg            >  1:2479745/1‑90 (MQ=255)
                                                                     ccAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCa          <  1:1763732/90‑1 (MQ=255)
                                                                      cAGTCAGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCAc         <  1:2901789/90‑1 (MQ=255)
                                                                           aGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCgctg    <  1:766197/90‑1 (MQ=255)
                                                                           aGGTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCgctg    <  2:4313/90‑1 (MQ=255)
                                                                            ggTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTAc                                                       >  2:894224/1‑38 (MQ=38)
                                                                            ggTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTAc                                                       <  1:894224/38‑1 (MQ=255)
                                                                            ggTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcg                        <  1:1702048/69‑1 (MQ=255)
                                                                            ggTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAgcg                        >  2:1702048/1‑69 (MQ=255)
                                                                            ggTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCgctgg   >  2:2820980/1‑90 (MQ=255)
                                                                             gTCACAGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCgctggc  <  1:1572530/90‑1 (MQ=255)
                                                                                  |                                                                                    
ACGGCAAAGTTATAGAACGGAGGCGGGGAAGAGGTTGCCCACTCCAGCGTACGGCCACCCCACGGGTCGCCAGTCAGGTCACGGTTCTGGTCGCGGTCGCGAATAGAAACGTACATCTGAATAACGAGGCAGAGAATACCCAGCGCAATCAGTACTGCACCGCTGGC  >  NZ_CP009273/444437‑444603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: