BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	4,087,693	T→C	F10F (TTT→TTC)	rhaS →	HTH‑type transcriptional activator RhaS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	4,087,693	0	T	C	100.0%	527.6 / NA	138	F10F (TTT→TTC)	rhaS	HTH‑type transcriptional activator RhaS
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/28); total (110/28)

Only 100 of 140 total aligned reads displayed.

TAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTTCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATT  >  NZ_CP009273/4087607‑4087777

tAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCg                                                                                   <  2:2957688/90‑1 (MQ=255)

  aGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTc                                                                                 >  1:1233612/1‑90 (MQ=255)

   gAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCt                                                                                >  2:2072407/1‑90 (MQ=255)

        tGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTaa                                                                           >  1:1829635/1‑90 (MQ=255)

         gACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          >  1:234351/1‑90 (MQ=255)

         gACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          >  1:1211140/1‑90 (MQ=255)

         gACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          >  2:188068/1‑90 (MQ=255)

             tCGTTATTTCTATTTCGCCGGGTTGACGGCATCAGGAGGCCAGTATGACCGTATTTCATAGTGTGGATTTTTTCCCGTCTGGTAACGCGt                                                                      <  2:1145344/90‑1 (MQ=255)

             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          <  2:959731/86‑1 (MQ=255)

             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAAc                                                                          >  1:959731/1‑86 (MQ=255)

             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGt                                                                      >  2:2026264/1‑90 (MQ=255)

             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGt                                                                      >  1:531789/1‑90 (MQ=255)

             tCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGt                                                                      >  1:250234/1‑90 (MQ=255)

               gTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTcc                                                                    >  2:2236877/1‑90 (MQ=255)

                tGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCg                                                                   <  1:944146/90‑1 (MQ=255)

                tGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCg                                                                   >  2:2340369/1‑90 (MQ=255)

                tGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCg                                                                   >  2:1061792/1‑90 (MQ=255)

                  aTTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTg                                                                 <  1:1022547/90‑1 (MQ=255)

                        aTTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATa                                                           >  2:2575955/1‑90 (MQ=255)

                        aTTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATa                                                           >  2:2220358/1‑90 (MQ=255)

                        aTTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATa                                                           >  1:374086/1‑90 (MQ=255)

                          ttCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGa                                                         <  1:2975207/90‑1 (MQ=255)

                                gtgtTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCg                                                   >  2:2306583/1‑90 (MQ=255)

                                  gtTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGc                                                 <  1:2790089/90‑1 (MQ=255)

                                  gtTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGc                                                 >  2:2427290/1‑90 (MQ=255)

                                       cgacATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCg                                            >  2:810254/1‑90 (MQ=255)

                                            tCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGc                                       >  2:1167238/1‑90 (MQ=255)

                                            tCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGc                                       >  1:268459/1‑90 (MQ=255)

                                               ggaggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGa                                    >  1:1184547/1‑90 (MQ=255)

                                                gaggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   <  1:1849364/90‑1 (MQ=255)

                                                gaggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   <  2:1555713/90‑1 (MQ=255)

                                                gaggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   <  1:822476/90‑1 (MQ=255)

                                                 aggCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAtt                                  <  1:19615/90‑1 (MQ=255)

                                                   gCCAGTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAtttt                                >  2:477009/1‑90 (MQ=255)

                                                       gTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGAt                                                            >  2:1402720/1‑58 (MQ=255)

                                                       gTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGAt                                                            <  1:1402720/58‑1 (MQ=255)

                                                       gTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTg                            >  1:1239746/1‑90 (MQ=255)

                                                       gTATGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTg                            >  2:908721/1‑90 (MQ=255)

                                                          tGACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAc                         <  1:2706286/90‑1 (MQ=255)

                                                           gACCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAca                        <  2:951422/90‑1 (MQ=255)

                                                            aCCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTATCGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcat                       >  1:1450644/1‑90 (MQ=255)

                                                            aCCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcat                       >  1:2604823/1‑90 (MQ=255)

                                                            aCCGTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcat                       >  2:687585/1‑90 (MQ=255)

                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  1:924063/1‑90 (MQ=255)

                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  1:1105427/1‑90 (MQ=255)

                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  2:2606082/1‑90 (MQ=255)

                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  2:480073/1‑90 (MQ=255)

                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  2:2728564/1‑90 (MQ=255)

                                                               gTATTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcat                    >  2:2164400/1‑90 (MQ=255)

                                                                 aTTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcatca                  >  2:1786366/1‑90 (MQ=255)

                                                                 aTTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcatca                  >  1:947192/1‑90 (MQ=255)

                                                                 aTTACATAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatcatca                  >  2:26151/1‑90 (MQ=255)

                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   >  2:910060/1‑67 (MQ=255)

                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGAt                                   <  1:910060/67‑1 (MQ=255)

                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTg                            <  1:994240/74‑1 (MQ=255)

                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  1:1722309/1‑90 (MQ=255)

                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  2:1424346/1‑90 (MQ=255)

                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  1:1335557/1‑90 (MQ=255)

                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  2:1981663/1‑90 (MQ=255)

                                                                       tAGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAttt            >  2:1854024/1‑90 (MQ=255)

                                                                        aGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAtttt           >  1:1612191/1‑90 (MQ=255)

                                                                        aGTGTGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGAtttt           >  2:2363875/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAAccc                                                     >  1:2184842/1‑47 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAAccc                                                     <  2:2184842/47‑1 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAca                        <  2:925002/76‑1 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2861127/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2929195/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2761868/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:1067372/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2735831/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2717228/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:127148/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:1986018/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:2432055/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:163459/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:2565473/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:2650681/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:2788460/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:649582/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:1478986/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:978314/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1002625/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1014211/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  1:143864/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:2108653/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1523045/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1577361/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1713620/1‑90 (MQ=255)

                                                                         gtgtGGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTc          >  2:1753230/1‑90 (MQ=255)

                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAcatc                      >  1:2244780/1‑76 (MQ=255)

                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  1:1708917/1‑90 (MQ=255)

                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  1:1668576/1‑90 (MQ=255)

                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  2:600509/1‑90 (MQ=255)

                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  1:373095/1‑90 (MQ=255)

                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  2:2462499/1‑90 (MQ=255)

                                                                           gtgGATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCAt        >  2:1487435/1‑90 (MQ=255)

                                                                              gATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAc                         <  2:199588/70‑1 (MQ=255)

                                                                              gATTTTTTCCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAAc                         >  1:199588/1‑70 (MQ=255)

                                                                                 tttttcCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAAtt  >  2:1940533/1‑90 (MQ=255)

                                                                                 tttttcCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAAtt  >  2:146656/1‑90 (MQ=255)

TAAGAACCTGACCTCGTGATTACTATTTCGCCGTGTTGACGACATCAGGAGGCCAGTATGACCGTATTACATAGTGTGGATTTTTTTCCGTCTGGTAACGCGTCCGTGGCGATAGAACCCCGGCTCCCGCAGGCGGATTTTCCTGAACATCATCATGATTTTCATGAAATT  >  NZ_CP009273/4087607‑4087777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`