| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 552,105 | C→G | intergenic (‑96/+12) | ybcI ← / ← ybcJ | metal‑dependent hydrolase/ribosome‑associated protein YbcJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 552,105 | 0 | C | G | 97.1% | 250.6 / ‑0.5 | 68 | intergenic (‑96/+12) | ybcI/ybcJ | metal‑dependent hydrolase/ribosome‑associated protein YbcJ |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base G (28/38); total (29/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.01e-01 | |||||||||||
TTCGGCAAAATGTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGCCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGCAGCGTTTGCG > NZ_CP009273/552019‑552188 | ttCGGCAAAATGTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCgg < 2:1189721/90‑1 (MQ=255) cGGCAAAATGTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGa > 1:2879585/1‑90 (MQ=255) ggCAAAATGTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGaa < 1:2559271/90‑1 (MQ=255) gCAAAATGTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGaaa < 1:1040709/90‑1 (MQ=255) gCAAAATGTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGaaa < 2:2165650/90‑1 (MQ=255) tGTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATc < 1:1557775/90‑1 (MQ=255) gTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCa < 1:725628/90‑1 (MQ=255) gTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCa < 2:2805029/90‑1 (MQ=255) gTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCa < 1:2553223/90‑1 (MQ=255) gATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGc > 1:150100/1‑90 (MQ=255) tGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaa < 2:124627/90‑1 (MQ=255) tGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaa < 1:1541456/90‑1 (MQ=255) tGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaa < 1:924338/90‑1 (MQ=255) tGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaa < 1:612359/90‑1 (MQ=255) tGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaa < 2:2170674/90‑1 (MQ=255) tGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaa < 2:259828/90‑1 (MQ=255) gCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaac < 1:1541233/90‑1 (MQ=255) cTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaaca < 2:1267174/90‑1 (MQ=255) cTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaaca < 1:1379806/90‑1 (MQ=255) cTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaaca < 2:1304109/90‑1 (MQ=255) aTCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCaacaac < 1:2831065/90‑1 (MQ=255) cATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTa < 2:1965713/90‑1 (MQ=255) tGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACg > 2:1641433/1‑90 (MQ=255) ggATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGc > 1:236406/1‑90 (MQ=255) gATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCt > 1:2102856/1‑90 (MQ=255) aTGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCtg > 1:2636515/1‑90 (MQ=255) aTGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCtg < 1:2650333/90‑1 (MQ=255) aTGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCtg > 1:2469869/1‑90 (MQ=255) aTGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCtg > 2:84802/1‑90 (MQ=255) aCGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaaca > 2:877169/1‑74 (MQ=255) aCGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGcaaca < 1:877169/74‑1 (MQ=255) aCGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGAc > 1:2954054/1‑90 (MQ=255) cGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGAcc < 2:2004283/90‑1 (MQ=255) cGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGAcc < 1:995764/90‑1 (MQ=255) gggCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTg > 2:1645451/1‑90 (MQ=255) gggCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTg > 2:343756/1‑90 (MQ=255) gCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATTCAGGGCg < 2:488733/50‑1 (MQ=255) gCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATTCAGGGCg > 1:488733/1‑50 (MQ=255) gCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCa > 1:1004942/1‑90 (MQ=255) gCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCa > 2:138107/1‑90 (MQ=255) gTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCaaa < 1:2260347/90‑1 (MQ=255) tAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCaaaa < 1:84802/90‑1 (MQ=255) agagGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTg < 2:434738/70‑1 (MQ=255) agagGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTg > 1:434738/1‑70 (MQ=255) agagGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAAc < 2:2037505/90‑1 (MQ=255) agGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTc < 2:2071240/90‑1 (MQ=255) agGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTc < 2:980043/90‑1 (MQ=255) agGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTc < 1:138107/90‑1 (MQ=255) ggCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATGAGGCAACAACCTGTACGCTGTGACCTGCAAAAGTCAc > 2:1442494/1‑90 (MQ=255) ggCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCAc > 1:2816626/1‑90 (MQ=255) ggCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCAc > 1:85984/1‑90 (MQ=255) ggCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCAc > 1:786354/1‑90 (MQ=255) ggCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGAAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCAc > 2:490272/1‑90 (MQ=255) cAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTg > 2:1708117/1‑90 (MQ=255) gAAAAGAGAACCGGCCTGTTGATACAGGCCGGGAAAGGGATCAGGcaaca < 1:1928443/50‑1 (MQ=255) gAAAAGAGAACCGGCCTGTTGATACAGGCCGGGAAAGGGATCAGGcaaca > 2:1928443/1‑50 (MQ=255) agagAACCGGCCTGTTGATACAGGGCGGAAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGcgac < 1:490272/90‑1 (MQ=255) gagaACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGcgac < 1:618053/89‑1 (MQ=255) gagaACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGcgac > 2:618053/1‑89 (MQ=255) agaACCGGCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGcgacga > 1:2047177/1‑90 (MQ=255) ggCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGc > 2:1172040/1‑90 (MQ=255) ggCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGc > 1:1499291/1‑90 (MQ=255) gCCTGTTGATACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGCa < 1:1817135/90‑1 (MQ=255) aTACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGCAGCGTTTgc < 2:1665733/90‑1 (MQ=255) aTACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGCAGCGTTTgc < 2:878681/90‑1 (MQ=255) aTACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGCAGCGTTTgc < 1:1329838/90‑1 (MQ=255) tACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGCAGCGTTTgcg > 2:2463422/1‑90 (MQ=255) tACAGGGCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGCAGCGTTTgcg > 1:1439548/1‑90 (MQ=255) | TTCGGCAAAATGTCGATGCTATCAGCATGGATGAACGGGGCGTAGAGGGCAAAAGTCTGAAAAGAGAACCGGCCTGTTGATACAGGCCGGGAAAGGGATCAGGCAACAACCTGTACGCTGTGACCTGCAAAACTCACTGTCTGACCGGCGACGATTTTGCAGCGTTTGCG > NZ_CP009273/552019‑552188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |