Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 115,628 A→C T137P (ACG→CCG)  ampD → 1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP009273115,6280AC100.0% 376.7 / NA 121T137P (ACG→CCG) ampD1,6‑anhydro‑N‑acetylmuramyl‑L‑alanine amidase AmpD
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (63/58);  total (63/58)

Only 100 of 121 total aligned reads displayed.

GCAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTACGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCC  >  NZ_CP009273/115542‑115714
                                                                                      |                                                                                      
gCAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCcgc                                                                                     <  2:1030197/90‑1 (MQ=255)
gCAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCcgc                                                                                     <  1:2279256/90‑1 (MQ=255)
gCAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCcgc                                                                                     <  2:740993/90‑1 (MQ=255)
 cAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCcgcg                                                                                    <  2:2156018/90‑1 (MQ=255)
    tGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGc                                                                                 <  1:2337843/90‑1 (MQ=255)
    tGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGc                                                                                 <  2:2761495/90‑1 (MQ=255)
    tGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGc                                                                                 <  2:1420614/90‑1 (MQ=255)
      aTTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCATTATCAACAGCTTGCGGCGGTTCCGCGGGCAc                                                                               <  2:1093855/90‑1 (MQ=255)
      aTTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCAc                                                                               <  1:2945004/90‑1 (MQ=255)
        ttttCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCAAtg                                                                             >  2:2074909/1‑90 (MQ=255)
               ttGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTgattgatt                                                                      <  2:1104782/90‑1 (MQ=255)
                    aTTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTAt                                                                 >  2:1061805/1‑90 (MQ=255)
                      tGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATcc                                                               <  2:1007508/90‑1 (MQ=255)
                            tGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCCCGGGGACTGATTGATTGCTATCCGGatat                                                         >  1:507233/1‑90 (MQ=255)
                             gAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATc                                                        <  2:800002/90‑1 (MQ=255)
                             gAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGAGATc                                                        >  2:1354004/1‑90 (MQ=255)
                                 gCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTa                                                    >  1:2178836/1‑90 (MQ=255)
                                 gCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTa                                                    <  1:1119165/90‑1 (MQ=255)
                                 gCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTa                                                    <  2:115361/90‑1 (MQ=255)
                                 gCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTa                                                    <  2:2034317/90‑1 (MQ=255)
                                  cACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCcgc                                                                                     >  2:2876960/1‑56 (MQ=255)
                                  cACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCcgc                                                                                     <  1:2876960/56‑1 (MQ=255)
                                  cACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTaa                                                   >  2:780427/1‑90 (MQ=255)
                                  cACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTaa                                                   >  2:1092737/1‑90 (MQ=255)
                                          cGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGa                                           >  2:1154409/1‑90 (MQ=255)
                                          cGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGa                                           <  1:326246/90‑1 (MQ=255)
                                           gCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGAc                                          >  1:985838/1‑90 (MQ=255)
                                            cTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACg                                         <  1:871456/90‑1 (MQ=255)
                                            cTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACg                                         <  2:2385271/90‑1 (MQ=255)
                                              ggCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTTCTATCCGGATATCGCTAAAAACATGACggg                                       >  2:1311808/1‑90 (MQ=255)
                                              ggCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACCGTTTTATTGCTATCCTGTTATCCCTTAAAACAAGACagg                                       >  2:1924839/1‑90 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  2:2206307/90‑1 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  1:2074909/90‑1 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  1:1741590/90‑1 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  2:2745985/90‑1 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  1:436018/90‑1 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  1:2262143/90‑1 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  1:2893607/90‑1 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  1:2687931/90‑1 (MQ=255)
                                                cGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  2:2372819/90‑1 (MQ=255)
                                                 gTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGGGCTGATTGATTGCTATCCGGGTATCGCTAAAAAAATTACggggcc                                    >  1:1418050/1‑87 (MQ=255)
                                                  tataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAt                                   <  1:298678/90‑1 (MQ=255)
                                                  tataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAt                                   <  1:828035/90‑1 (MQ=255)
                                                  tataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAt                                   <  1:971959/90‑1 (MQ=255)
                                                  tataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAt                                   <  1:2168801/90‑1 (MQ=255)
                                                  tataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAt                                   <  1:1061805/90‑1 (MQ=255)
                                                   ataCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAtt                                  >  2:2705187/1‑90 (MQ=255)
                                                     aCCGATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATtgt                                <  1:1745394/90‑1 (MQ=255)
                                                       cGATGCGCAGTATCAACAGCTTGCGGCGGGTCCCCGGGCACTGGTTGATTGCTATCCCGATATTGCTTAAAACATGACGGGCCATTGTGa                              >  1:2482867/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGGACTGATTTTTTGCTATCCGGGTATCGCTAAAAAAATGACGGGGCCTTGTGat                             >  1:1647722/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGGACCGATTGATTGCTATCCGGAAATCGCTAAAAAAATGACGGGGCATtgtggt                             >  1:1328570/1‑88 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGGTTGCTATCCGGGTATCGCTAAAAAAATGACGGGCCCTTGTGat                             >  2:2478980/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGc                                                                    >  1:2395418/1‑51 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  1:2583697/82‑1 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  1:2696333/82‑1 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     >  2:2696333/1‑82 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     >  2:2583697/1‑82 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGGCATTGTGat                             >  1:1154956/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCCTTGTGat                             >  1:681220/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCCTTGTGat                             >  2:2426231/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAtt                                  <  2:126791/85‑1 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAtt                                  >  1:126791/1‑85 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGat                             >  2:2871200/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGat                             >  2:479360/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGat                             >  2:1058119/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACAAGACGGGGCCTTGTGat                             >  2:2690377/1‑90 (MQ=255)
                                                        gATGCGCAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCCCTAAAAACATGACGGGCCATtgtggt                             >  1:726554/1‑88 (MQ=255)
                                                           gcgcAGTATCAACAGCTTGCGGCGGTTCCGCGGGGACTGATTGATTGCTTTTCCGGTATCGCTAAAAAAATGACGGGGCATTTTGATAtt                          >  1:1716543/1‑90 (MQ=255)
                                                           gcgcAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGc                                                                    >  2:190878/1‑48 (MQ=255)
                                                           gcgcAGTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGc                                                                    <  1:190878/48‑1 (MQ=255)
                                                                gTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGcc                     >  2:947566/1‑90 (MQ=255)
                                                                gTATCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGcc                     >  2:826897/1‑90 (MQ=255)
                                                                  aTCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCgg                   <  1:2947981/90‑1 (MQ=255)
                                                                  aTCAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCgg                   <  2:1905880/90‑1 (MQ=255)
                                                                    cAACAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGAt                 <  1:803460/90‑1 (MQ=255)
                                                                     aaCAGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  2:2444836/69‑1 (MQ=255)
                                                                     aaCAGCTTGCGGCGGGTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGGCATTTTGATATTTCGCCGGATc                >  2:2321721/1‑90 (MQ=255)
                                                                        aGCTTGCGGCGGTTCCGCGGGGACTGATTGATTTCTATCCGGATATCGCTAAAAAAATGACGGGCCATTGTGATATTTCGCCGGATCggg             >  1:1942138/1‑89 (MQ=255)
                                                                        aGCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAAAATGACGGGCCATTGTGATATTTCGCCGGATCGGa             >  1:186930/1‑90 (MQ=255)
                                                                         gCTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGaa            <  1:479360/90‑1 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCCCTGATTGATTGGTATCCGGGTATCGCCAAAAACATGACGGGCCATTGTGATATTTCGCCGGGTCGGgaa           >  2:2089218/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGatat                                                         <  2:592290/44‑1 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGatat                                                         >  1:592290/1‑44 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     <  2:2245682/64‑1 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGcc                                     >  1:2245682/1‑64 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAt                                   <  2:1563888/66‑1 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCAt                                   >  1:1563888/1‑66 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTTCGCCGGATCGGaaa           >  2:1442211/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTTCGCCCGATCGGaaa           >  1:1169890/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGaaa           >  2:1398258/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGaaa           >  2:2777703/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGaaa           >  2:1818271/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGaaa           >  2:1933266/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGaaa           >  2:530043/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGaaa           >  2:2466760/1‑90 (MQ=255)
                                                                          cTTGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGaaa           >  2:1997942/1‑90 (MQ=255)
                                                                            tGCGGCGGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAAc         <  1:2470429/90‑1 (MQ=255)
                                                                             gcggcgGTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAAcc        <  1:1424433/90‑1 (MQ=255)
                                                                              cggcggTTCCGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCg       <  2:2941584/90‑1 (MQ=255)
                                                                                   gTTCCGCGGGCACTGATTTATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATccc  >  2:476890/1‑90 (MQ=255)
                                                                                      |                                                                                      
GCAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTACGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCC  >  NZ_CP009273/115542‑115714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑