| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2283591 | NA (NA) | 25 (1.830) | 16/162 | 0.1 | 86.4% | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3512441 | 4 (0.290) | intergenic (‑18/+383) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2283503‑2283591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAG < NZ_CP009273/3512441‑3512355 CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 2:105495/90‑1CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 1:117344/90‑1CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 1:258786/90‑1 GGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAG < 1:378541/90‑1 AAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAG > 2:51444/1‑90 TGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAA > 2:251154/1‑90 CATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAAT > 1:37306/1‑90 CATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAAT > 2:348892/1‑90 CATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 1:221879/71‑1 CATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC > 2:309523/1‑71 CATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC < 1:309523/71‑1 CATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC > 2:221879/1‑71 CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAAC > 2:47225/1‑90 TGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACG > 2:194106/1‑90 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAAT < 1:194106/90‑1 TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATA < 2:318178/90‑1 TATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATA < 1:9431/90‑1 TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTC > 1:359518/1‑90 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGT < 1:225610/90‑1 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTG < 1:47225/90‑1 TGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTG < 1:51444/90‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGG > 1:270837/1‑90 GATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGG > 2:158306/1‑90 GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAG > 2:18245/1‑90 GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAG > 1:187851/1‑90 GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAG > 1:177632/1‑90 GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTG < 1:340096/68‑1 GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTG > 2:340096/1‑68 GGGACTTGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATACCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAG > 1:265225/1‑90 TGTTCGCACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTAT < 2:187851/90‑1 CACCTTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCG < 1:286369/90‑1 TTCCTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAG < 1:154756/90‑1 CGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/2283503‑2283591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAGTAGTACCGAAAAAATGGCAGAGAAACGCAATATCTTTCTGGTTGGGCCTATGGGTGCCGGAAAAAGCACTATTGGGCGCCAG < NZ_CP009273/3512441‑3512355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |