| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1903072 | 0 (0.000) | 11 (0.790) | 10/164 | 0.3 | 100% | intergenic (‑49/‑110) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
ACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTA > NZ_CP009273/1902989‑1903147 | gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAAc < 1:128665‑M2/10‑1 (MQ=255)gagaaaaaatcggctcaaaaatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAAc < 2:345117‑M2/10‑1 (MQ=255)gagaaaaaatcggcacaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAAc < 1:326953‑M2/10‑1 (MQ=255)acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaagg > 1:397205‑M1/1‑84 (MQ=255)acGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaagg > 2:5314‑M1/1‑84 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAg > 2:346063‑M2/79‑90 (MQ=255) aaatcggcccaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGcc < 1:192717‑M2/16‑1 (MQ=255) cAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaaca < 1:5314‑M1/90‑15 (MQ=255) aaCGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagt < 2:412426‑M1/90‑18 (MQ=255) ccATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctga > 1:94925‑M1/1‑67 (MQ=255) tCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatat > 1:182450‑M1/1‑64 (MQ=255) tttttCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatca < 2:281366‑M1/90‑34 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGc > 2:85947‑M2/54‑90 (MQ=255) gactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCgg > 2:122693‑M2/46‑90 (MQ=255) tcCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga < 2:98481‑M1/90‑49 (MQ=255) ttCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat < 1:414609‑M1/90‑54 (MQ=255) agaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTa > 2:4397‑M2/32‑53 (MQ=255) agaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTa < 1:4397‑M2/22‑1 (MQ=255) tacctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 1:15850‑M1/1‑31 (MQ=255) acctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 2:397205‑M1/90‑61 (MQ=255) tcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTa < 1:85947‑M2/79‑1 (MQ=255) | ACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTA > NZ_CP009273/1902989‑1903147 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |