| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 22 (1.590) | 15/164 | 0.1 | 91.7% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3512437 = | 2 (0.140) | intergenic (‑14/+387) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
GAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGA > NZ_CP009273/3512348‑3512526 | catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccc < 1:383337‑M2/1‑1 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 1:320892‑M2/89‑90 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa > 1:118941‑M2/88‑90 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa > 2:246957‑M2/88‑90 (MQ=255) cTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaa < 1:154756‑M2/90‑4 (MQ=255) gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTAt < 2:149210‑M2/10‑1 (MQ=255) cgcCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtg < 1:286369‑M2/90‑8 (MQ=255) aatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTaa < 1:266639‑M2/17‑1 (MQ=255) aTAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaaca < 2:187851‑M2/90‑14 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGGTATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 1:265225‑M2/1‑71 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 1:177632‑M2/1‑71 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 1:187851‑M2/1‑71 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 2:18245‑M2/1‑71 (MQ=255) cccATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatc > 2:158306‑M2/1‑59 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCa < 1:236598‑M2/37‑1 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCt < 2:182100‑M2/30‑1 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCt > 1:182100‑M2/49‑78 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCagagag > 2:143867‑M2/49‑90 (MQ=255) atgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgc < 1:413415‑M2/43‑1 (MQ=255) cccAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgt > 1:270837‑M2/1‑51 (MQ=255) gactgagtcacccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAgcgc > 2:360197‑M2/46‑90 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtca < 1:47225‑M2/90‑42 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtca < 1:51444‑M2/90‑42 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc < 1:340096‑M2/68‑20 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 2:340096‑M2/1‑49 (MQ=255) aCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc < 1:225610‑M2/90‑44 (MQ=255) gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 1:359518‑M2/1‑43 (MQ=255) ccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATg < 2:19338‑M2/56‑1 (MQ=255) tatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata < 2:318178‑M2/90‑54 (MQ=255) tatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata < 1:9431‑M2/90‑54 (MQ=255) atTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag < 1:194106‑M2/90‑55 (MQ=255) gaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 2:127806‑M2/63‑1 (MQ=255) gaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 2:244065‑M2/63‑1 (MQ=255) cGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 2:194106‑M2/1‑32 (MQ=255) gTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag > 2:47225‑M2/1‑31 (MQ=255) atttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 2:320892‑M2/65‑1 (MQ=255) atttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:342376‑M2/65‑1 (MQ=255) gCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATaa > 1:287353/1‑90 (MQ=255) gcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAg < 1:94386‑M2/73‑1 (MQ=255) aTTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg > 1:37306‑M2/1‑20 (MQ=255) aTTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg > 2:348892‑M2/1‑20 (MQ=255) tattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa < 1:87922‑M2/49‑1 (MQ=255) tattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa > 2:87922‑M2/15‑63 (MQ=255) ttCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca > 2:251154‑M2/1‑15 (MQ=255) tCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg < 2:287353/90‑1 (MQ=255) gcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg < 2:36396‑M2/81‑1 (MQ=255) ttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGt > 2:334753‑M2/5‑90 (MQ=255) ctactaAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt > 2:51444‑M2/1‑8 (MQ=255) ctaAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc < 1:378541‑M2/90‑86 (MQ=255) | GAGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGA > NZ_CP009273/3512348‑3512526 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |