Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2100158	2100191	34	2 [0]	[1] 3	wzy	O16 family O‑antigen polymerase

GATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAA  >  NZ_CP009273/2100111‑2100157                                               | gatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCaa  >  1:109008/1‑47 (MQ=255) gatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCaa  <  2:109008/47‑1 (MQ=255)                                               | GATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAA  >  NZ_CP009273/2100111‑2100157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑