Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3629247	3631164	1918	22 [0]	[1] 2	[yhiM]–[pitA]	[yhiM],yhiN,[pitA]

ATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTA  >  NZ_CP009273/3629161‑3629335                                                                                      |                                                                                          aTTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaa                                                                                       >  1:223417‑M1/1‑86 (MQ=255)   tCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaagg                                                                                     <  2:223417‑M1/90‑7 (MQ=255)      ttCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgc                                                                                  >  2:404013‑M1/1‑81 (MQ=255)       tCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcg                                                                                 >  2:318301‑M1/1‑80 (MQ=255)                                 ggTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcga                                                                                >  2:40897‑M1/1‑54 (MQ=255)                                 ggTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcga                                                                                <  1:40897‑M1/65‑12 (MQ=255)                                       cTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactca                                                 <  1:318301‑M1/90‑43 (MQ=255)                                         ttACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagt                                               >  1:335774‑M1/1‑46 (MQ=255)                                          tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtc                                              >  2:404059‑M1/1‑45 (MQ=255)                                                gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca                                        >  2:76170‑M1/1‑39 (MQ=255)                                                gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca                                        >  1:7929‑M1/1‑39 (MQ=255)                                                  tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt                                      <  1:404013‑M1/90‑54 (MQ=255)                                                                           gggTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc             >  2:328714‑M1/1‑12 (MQ=255)                                                                                     aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   <  2:137622‑M1/90‑89 (MQ=255)                                                                                     aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  2:34971‑M1/1‑2 (MQ=255)                                                                                     aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  2:143387‑M1/1‑2 (MQ=255)                                                                                     aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   <  1:143387‑M1/90‑89 (MQ=255)                                                                                     aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  1:381068‑M1/1‑2 (MQ=255)                                                                                     aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   <  1:352496‑M1/90‑89 (MQ=255)                                                                                     aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  1:302439‑M1/1‑2 (MQ=255)                                                                                     aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat   >  1:144658‑M1/1‑2 (MQ=255)                                                                                      aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccagtaaatg  >  2:340443‑M1/1‑1 (MQ=255)                                                                                      |                                                                                          ATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTA  >  NZ_CP009273/3629161‑3629335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑