Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1578163	1578212	50	2 [0]	[0] 2	safA	two‑component system connector SafA

GCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTA  >  NZ_CP009273/1578213‑1578264 |                                                    gcatTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTa  >  1:52331/1‑52 (MQ=255) gcatTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTa  <  2:52331/52‑1 (MQ=255) |                                                    GCATTTCAAATATGTTTATTTAGCGGATAACGTTAAAAATCGTTAATCAGTA  >  NZ_CP009273/1578213‑1578264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑