| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,713,233 | (A)5→4 | coding (652/699 nt) | tapT → | tRNA‑uridine aminocarboxypropyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,713,229 | 0 | A | . | 100.0% | 63.6 / NA | 16 | coding (648/699 nt) | tapT | tRNA‑uridine aminocarboxypropyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (8/8); total (8/8) | |||||||||||
TGTTAGATATGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGGAAAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCGGGAGACC > NZ_CP009273/2713147‑2713308 | tGTTAGATATGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGGaaaacgca < 2:125049/90‑5 (MQ=255) tGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTggg > 2:115929/1‑90 (MQ=255) gCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATc < 1:18529/84‑1 (MQ=255) gCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATc > 2:18529/1‑84 (MQ=255) gCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGt < 1:247157/89‑1 (MQ=255) gCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGt > 2:247157/1‑89 (MQ=255) cGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATc < 1:389190/90‑1 (MQ=255) cGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATc < 2:45309/90‑1 (MQ=255) gggCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGa > 2:332510/1‑90 (MQ=255) aGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTaaaa > 1:204666/1‑90 (MQ=255) gCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATc < 1:262342/60‑1 (MQ=255) gCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATc > 2:262342/1‑60 (MQ=255) cTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACt < 2:88707/90‑1 (MQ=255) tttAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACtt > 1:335752/1‑90 (MQ=255) cGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCggg < 2:163926/88‑1 (MQ=255) cGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCggg > 1:163926/1‑88 (MQ=255) tATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCGGGAGAcc < 2:200511/90‑1 (MQ=255) | TGTTAGATATGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGGAAAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCGGGAGACC > NZ_CP009273/2713147‑2713308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |