| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,681,554 | (T)5→4 | coding (980/3474 nt) | bcsC ← | cellulose synthase complex outer membrane protein BcsC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,681,550 | 0 | T | . | 100.0% | 55.6 / NA | 14 | coding (984/3474 nt) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (6/8); total (6/8) | |||||||||||
GCTGGATCGCCAGCCAGTAGCGGTTTACTTTCAGCAGACTGTTCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGCTTTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAATACGCCTGGCCCAGCGCCCCCAGAGCTTCACTG > NZ_CP009273/3681465‑3681628 | gctgGATCGCCAGCCAGTAGCGGTTTACTTTCAGCAGACTGTTCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGGGCGAGGGCttttc > 2:364541/1‑89 (MQ=255) tAGCGGTTTACTTTCAGCAGACTGTTCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCAt < 1:19622/90‑1 (MQ=255) aGCGGTTTACTTTCAGCAGACTGTTCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCAtt > 2:399718/1‑90 (MQ=255) gTTTACTTTCAGCAGACTGTTCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGgcg > 2:324723/1‑90 (MQ=255) ttCAGCAGACTGTTCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGc < 1:107523/90‑1 (MQ=255) gACTGTTCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTg < 1:225808/90‑1 (MQ=255) ttCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAAt > 1:173115/1‑90 (MQ=255) ttCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAAt > 2:142494/1‑90 (MQ=255) ttCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAAt < 2:362680/90‑1 (MQ=255) tCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAATACGCCTGGc > 2:15176/1‑90 (MQ=255) gttgCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAATACGCCTGGCCCAgc < 1:142494/90‑1 (MQ=255) ttgCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAATACGCCTGGCCCAgcg < 1:245833/90‑1 (MQ=255) ttgCTGCTGTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAATACGCCTGGCCCAgcg < 2:301795/90‑1 (MQ=255) ctgTGCGGGTCCAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAATACGCCTGGCCCAGCGCCCCCa > 1:49860/1‑90 (MQ=255) cAGTGCGAGGGC‑TTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAATACGCCTGGCCCAGCGCCCCCAGAGCTTCACTg < 2:125666/90‑1 (MQ=255) | GCTGGATCGCCAGCCAGTAGCGGTTTACTTTCAGCAGACTGTTCCATTTGTCGTTGTTGCTGCTGTGCGGGTCCAGTGCGAGGGCTTTTTCCAGATTCGCCACTGCATTGGCGCGATCGCCTTTCTGAGAATACGCCTGGCCCAGCGCCCCCAGAGCTTCACTG > NZ_CP009273/3681465‑3681628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |