| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,165,187 | (A)5→4 | intergenic (‑233/‑129) | coaA ← / → BW25113_RS20630 | type I pantothenate kinase/tRNA‑Thr |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,165,183 | 0 | A | . | 100.0% | 46.3 / NA | 12 | intergenic (‑229/‑133) | coaA/BW25113_RS20630 | type I pantothenate kinase/tRNA‑Thr |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (11/1); total (11/1) | |||||||||||
TATCGTTGAAAAGCAATGTGACAGATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAA > NZ_CP009273/4165095‑4165264 | tATCGTTGAAAAGCAATGTGACAGATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTGaa > 2:181953/1‑90 (MQ=255) aTCGTTGAAAAGCAATGTGACAGATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTGaaa < 2:44633/90‑1 (MQ=255) cGTTGAAAAGCAATGTGACAGATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTGaaaag < 2:61824/90‑2 (MQ=255) aaaaGCAATGTGACAGATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGc < 2:300802/90‑1 (MQ=255) aTGTGACAGATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGCTAATCTg > 2:369331/1‑90 (MQ=255) gATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGCTAATCTGCCCTCCGt > 1:2844/1‑90 (MQ=255) gATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGCTAATCAGCCCTCCGt > 2:312404/1‑90 (MQ=255) atTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGCTAATCTGCCCTCCGTTCg > 1:349899/1‑90 (MQ=255) ttCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGCTAATCTGCCCTCCGTTCgg > 1:358051/1‑90 (MQ=255) aTCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGt > 2:329880/1‑90 (MQ=255) aTCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGt > 2:7794/1‑90 (MQ=255) ttAGCAGGAGCGCATTGTTGAGCACAATGATGTTG‑AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATaaaa > 1:53154/1‑90 (MQ=255) atgatgTTG‑AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCaa > 1:149254/1‑90 (MQ=255) atgatgTTG‑AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCaa > 1:4295/1‑90 (MQ=255) atgatgTTG‑AAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCaa > 2:113029/1‑90 (MQ=255) | TATCGTTGAAAAGCAATGTGACAGATATTCCATCTGATAAAAAGAATTATGGTTTAGCAGGAGCGCATTGTTGAGCACAATGATGTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAA > NZ_CP009273/4165095‑4165264 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |