Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1239621	1239666	46	2 [1]	[1] 3	ycgR	flagellar brake protein

CATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATC  >  NZ_CP009273/1239531‑1239640                                                                                          |                     cATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTgg                      >  2:262310/1‑90 (MQ=255)                     cATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATc  <  2:1983/90‑1 (MQ=255)                                                                                          |                     CATGCCGCCTAACGACAAATCATACAGGCGGAAACGTAACGTACTGTTATCCGCCAGTTTGGTCTGGCAAAAATAAGGCGGATGGAGTGGGGCGGAGATGCGGAAATATC  >  NZ_CP009273/1239531‑1239640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑