Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1135272	1135321	50	3 [1]	[0] 3	flgK	flagellar hook‑associated protein FlgK

GTGACGCAGCTTTCCAATCAGCAGCAGTCGATTTCCGGTGTCAATCTCGATGAGGAGTACGGAAATCTGCAACGTTTTCAGCAGTATTAC  >  NZ_CP009273/1135322‑1135411 |                                                                                          gtgACGCAGCTTTCCAATCAGCAGCAGTCGATTTCCGGTGTCAATCTCGATgagg                                     <  1:41581/55‑1 (MQ=255) gtgACGCAGCTTTCCAATCAGCAGCAGTCGATTTCCGGTGTCAATCTCGATgagg                                     >  2:41581/1‑55 (MQ=255) gtgACGCAGCTTTCCAATCAGCAGCAGTCGATTTCCGGTGTCAATCTCGATGAGGAGTACGGAAATCTGCAACGTTTTCAGCAGTATTAc  >  1:210653/1‑90 (MQ=255) |                                                                                          GTGACGCAGCTTTCCAATCAGCAGCAGTCGATTTCCGGTGTCAATCTCGATGAGGAGTACGGAAATCTGCAACGTTTTCAGCAGTATTAC  >  NZ_CP009273/1135322‑1135411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑