| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,679,062 | A→C | *1158E (TAA→GAA) | bcsC ← | cellulose synthase complex outer membrane protein BcsC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,679,062 | 0 | A | C | 100.0% | 61.3 / NA | 19 | *1158E (TAA→GAA) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (8/11); total (8/11) | |||||||||||
ATTGTCTCCCCCCGGAAATCCCAGATTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTACCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCACCCTGCCATCCGGCGGCGGAATAACGTACGTAGAGCAGGA > NZ_CP009273/3678979‑3679148 | aTTGTCTCCCCCCGGAAATCCCAGATTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAGACTTCCCAGTc < 2:331182/90‑1 (MQ=255) tcCCCCCGGAAATCCCAGATTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTa < 1:56742/90‑1 (MQ=255) ccccccGGAAATCCCAGATTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTaa > 1:355068/1‑90 (MQ=255) ccccGGAAATCCCAGATTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAgg < 2:355068/90‑1 (MQ=255) ccGGAAATCCCAGATTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTa < 1:185904/90‑1 (MQ=255) aTCCCAGATTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCg > 2:19662/1‑90 (MQ=255) aTTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTgcgg < 1:184270/90‑1 (MQ=255) cGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGATAAATc < 2:38577/90‑1 (MQ=255) aGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCa > 2:401898/1‑90 (MQ=255) aGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCa > 2:29740/1‑90 (MQ=255) aTCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAAACCATGTCAccccg > 2:296612/1‑88 (MQ=255) ttAAGAGAGGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCACCCTGCCATCcggcggc < 1:43058/90‑1 (MQ=255) gagGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCAccc > 1:366235/1‑70 (MQ=255) gagGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCAccc < 2:366235/70‑1 (MQ=255) agGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCACCCTGCCATCCGGCGGCGGaa < 2:61529/87‑1 (MQ=255) agGCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCACCCTGCCATCCGGCGGCGGaa > 1:61529/1‑87 (MQ=255) ggCGCTATCTGAAAACTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCACCCCGCCATCCGGCGGCGGGATAac > 2:182818/1‑90 (MQ=255) cTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCACCCTGCCATCCGGCGGCGGAATAACGTACGTAGAGCAGGa < 1:401898/90‑1 (MQ=255) cTTCCCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCACCCTGCCATCCGGCGGCGGAATAACGTACGTAGAGCAGGa < 1:29740/90‑1 (MQ=255) | ATTGTCTCCCCCCGGAAATCCCAGATTGCCGCCCGAGTATACCCGATCGCAGCGGCATTAAGAGAGGCGCTATCTGAAAACTTACCAGTCGGCGTAAGGTATCAGCGGCTGCGGCGGTAAATCCATGTCACCCTGCCATCCGGCGGCGGAATAACGTACGTAGAGCAGGA > NZ_CP009273/3678979‑3679148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |