| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 879,010 | T→C | intergenic (‑166/‑119) | ybjG ← / → mdfA | undecaprenyl‑diphosphate phosphatase/multidrug efflux MFS transporter MdfA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 879,010 | 0 | T | C | 100.0% | 14.8 / NA | 6 | intergenic (‑166/‑119) | ybjG/mdfA | undecaprenyl‑diphosphate phosphatase/multidrug efflux MFS transporter MdfA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (2/4); total (2/4) | |||||||||||
CGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCT > NZ_CP009273/878926‑879041 | cGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCta < 2:96930/90‑1 (MQ=255) gCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCtata < 2:337347/90‑1 (MQ=255) ccTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAATGTaa > 2:166381/1‑90 (MQ=255) cAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAATGTAAGaa < 2:186523/90‑1 (MQ=255) aGCGGCCTGTTTACGGTGGGTGAATGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAATGTAAGAAtg < 2:102781/90‑1 (MQ=255) gCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAATGTAAGAATGTGCt > 2:266784/1‑90 (MQ=255) | CGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAATGTAAGAATGTGCT > NZ_CP009273/878926‑879041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |