Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 1,626,268 | A→G | pseudogene (359/1368 nt) | ydfJ ← | MHS family MFS transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,626,268 | 0 | A | G | 100.0% | 33.0 / NA | 11 | pseudogene (359/1368 nt) | ydfJ | MHS family MFS transporter |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (5/6); total (5/6) |
GGCGCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCAAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGA > NZ_CP009273/1626184‑1626346 | ggCGCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATg > 1:240946/1‑90 (MQ=255) aTCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATc < 2:213045/90‑1 (MQ=255) cGTTCCGGCCCCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCtg < 1:123240/90‑1 (MQ=255) tCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAacaca < 1:231852/90‑1 (MQ=255) tCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAacaca < 2:78268/90‑1 (MQ=255) gCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAg < 1:205305/90‑1 (MQ=255) cAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAggtggt > 2:319663/1‑90 (MQ=255) aataCGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCcat > 2:109648/1‑90 (MQ=255) ataCGCAACGTCACCAGCGAGATGGGGGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCcatc > 2:372553/1‑90 (MQ=255) aaCGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTg < 1:243405/90‑1 (MQ=255) aCGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGa > 2:69093/1‑90 (MQ=255) | GGCGCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCAAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGA > NZ_CP009273/1626184‑1626346 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |