Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 1,626,268 A→G pseudogene (359/1368 nt) ydfJ ← MHS family MFS transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092731,626,2680AG100.0% 33.0 / NA 11pseudogene (359/1368 nt)ydfJMHS family MFS transporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (5/6);  total (5/6)

GGCGCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCAAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGA  >  NZ_CP009273/1626184‑1626346
                                                                                    |                                                                              
ggCGCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATg                                                                           >  1:240946/1‑90 (MQ=255)
                  aTCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATc                                                         <  2:213045/90‑1 (MQ=255)
                    cGTTCCGGCCCCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCtg                                                       <  1:123240/90‑1 (MQ=255)
                                       tCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAacaca                                    <  1:231852/90‑1 (MQ=255)
                                       tCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAacaca                                    <  2:78268/90‑1 (MQ=255)
                                                gCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAg                           <  1:205305/90‑1 (MQ=255)
                                                     cAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAggtggt                      >  2:319663/1‑90 (MQ=255)
                                                                 aataCGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCcat          >  2:109648/1‑90 (MQ=255)
                                                                  ataCGCAACGTCACCAGCGAGATGGGGGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCcatc         >  2:372553/1‑90 (MQ=255)
                                                                        aaCGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTg   <  1:243405/90‑1 (MQ=255)
                                                                         aCGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGa  >  2:69093/1‑90 (MQ=255)
                                                                                    |                                                                              
GGCGCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCAAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGA  >  NZ_CP009273/1626184‑1626346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: