Predicted mutation
evidence seq id position mutation annotation gene description
RA NZ_CP009273 1,909,798 T→C intergenic (‑7/+90) proQ ← / ← msrC RNA chaperone ProQ/L‑methionine (R)‑S‑oxide reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092731,909,7980TC81.8% 17.4 / 0.6 11intergenic (‑7/+90)proQ/msrCRNA chaperone ProQ/L‑methionine (R)‑S‑oxide reductase
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (4/5);  total (5/6)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTT  >  NZ_CP009273/1909723‑1909878
                                                                           |                                                                                
gTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACgg                                                                    >  2:258936/1‑90 (MQ=255)
                 ccAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAgcgc                                                   <  1:112432/90‑1 (MQ=255)
                 ccAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAgcgc                                                   <  1:333463/90‑1 (MQ=255)
                      aaCGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCa                                              <  2:327411/90‑1 (MQ=255)
                                     ttACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCAtt                               <  1:54852/90‑1 (MQ=255)
                                          gCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAAt                          >  2:233544/1‑90 (MQ=255)
                                             aTTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGAc                       >  2:48725/1‑90 (MQ=255)
                                                     tAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAg               >  1:297190/1‑90 (MQ=255)
                                                       ggTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTa             >  1:210043/1‑90 (MQ=255)
                                                            aTTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGc        <  2:81585/90‑1 (MQ=255)
                                                                  cATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGtt  <  2:297190/90‑1 (MQ=255)
                                                                           |                                                                                
GTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTT  >  NZ_CP009273/1909723‑1909878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑