mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,142,237 | 0 | T | G | 66.7% | 1.2 / 10.1 | 15 | T264P (ACC→CCC) | ppc | phosphoenolpyruvate carboxylase |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 64.7% | ‑5.1 / 11.4 | 17 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 115,871 | 0 | T | G | 57.1% | 5.4 / 13.5 | 14 | V35G (GTG→GGG) | ampE | beta‑lactamase regulator AmpE |
| * | NZ_CP009273 | 3,454,142 | 0 | A | T | 57.1% | 0.7 / 10.0 | 14 | I323F (ATT→TTT) | gspF | type II secretion system inner membrane protein GspF |
| * | NZ_CP009273 | 4,248,902 | 0 | T | G | 57.1% | 6.7 / 12.9 | 14 | G393G (GGT→GGG) | dinF | MATE family efflux transporter DinF |
| * | NZ_CP009273 | 3,184,462 | 0 | C | T | 56.2% | 0.5 / 14.3 | 16 | P158S (CCA→TCA) | yqiI | fimbrial protein |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 55.6% | 5.8 / 23.9 | 18 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 754,034 | 0 | G | T | 54.5% | 1.6 / 12.4 | 11 | intergenic (+173/‑128) | sdhB/sucA | succinate dehydrogenase iron‑sulfur subunit SdhB/2‑oxoglutarate dehydrogenase E1 component |
| * | NZ_CP009273 | 2,994,515 | 0 | T | C | 54.5% | 3.6 / 11.3 | 11 | F284S (TTC→TCC) | xdhA | xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| * | NZ_CP009273 | 3,902,484 | 0 | T | C | 54.5% | 3.9 / 12.1 | 11 | I106V (ATT→GTT) | pstA | phosphate ABC transporter permease PstA |
| * | NZ_CP009273 | 4,061,105 | 0 | A | G | 53.8% | 5.3 / 13.8 | 13 | L511P (CTG→CCG) | yihQ | sulfoquinovosidase |
| * | NZ_CP009273 | 4,292,475 | 0 | T | G | 53.8% | 11.4 / 14.6 | 13 | T141P (ACC→CCC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 3,562,602 | 0 | A | C | 53.3% | 11.6 / 13.7 | 15 | R29R (CGT→CGG) | glgC | glucose‑1‑phosphate adenylyltransferase |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 52.9% | 6.1 / 17.2 | 17 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 52.9% | ‑1.3 / 14.3 | 17 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |