| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,790,568 | Δ1 bp | intergenic (‑181/‑2) | yqaE ← / → ygaV | YqaE/Pmp3 family membrane protein/metalloregulator ArsR/SmtB family transcription factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,790,566 | 0 | A | . | 95.0% | 72.1 / ‑1.4 | 20 | intergenic (‑179/‑4) | yqaE/ygaV | YqaE/Pmp3 family membrane protein/metalloregulator ArsR/SmtB family transcription factor |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (9/10); total (10/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.29e-01 | |||||||||||
TTTACTCTCATTTACGCTGCTGAGGCTGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAATAAATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGA > NZ_CP009273/2790485‑2790647 | tttACTCGCATTTTCTCTGCTGAGGCTGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATCCTTAAAT‑AATATGACt < 1:562705/90‑1 (MQ=255) cATTTACGCTGCTGAGGCTGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTcgc > 1:974847/1‑90 (MQ=255) gctgAGGCTGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAg > 1:848478/1‑90 (MQ=255) gAGGCTGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGcc < 2:906735/90‑1 (MQ=255) gAGGCTGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGcc < 2:449842/90‑1 (MQ=255) tGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAATAAATATGACTGAACTCGCGCAATTACAGGCCAGTg > 2:364896/1‑90 (MQ=255) tGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAg > 2:574680/1‑90 (MQ=255) gCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAg > 1:962476/1‑90 (MQ=255) gCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAg > 1:809309/1‑90 (MQ=255) gCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAg > 1:653675/1‑90 (MQ=255) gCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAg > 1:514729/1‑90 (MQ=255) cATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGc < 1:574680/90‑1 (MQ=255) ttagtttagAGTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCt < 1:343675/90‑1 (MQ=255) agagTTTACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGaa < 2:817354/90‑1 (MQ=255) ttACTTAATTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCaa > 1:738804/1‑90 (MQ=255) aaTTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGcc < 2:68814/90‑1 (MQ=255) aaTTTAGAAAATACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGcc < 1:429409/90‑1 (MQ=255) aaTACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAAc < 1:527355/90‑1 (MQ=255) tACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGa > 1:983697/1‑90 (MQ=255) tACTTAAAT‑AATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGa < 2:769399/90‑1 (MQ=255) | TTTACTCTCATTTACGCTGCTGAGGCTGGTATATGTTGCATTTTTAGTTTAGAGTTTACTTAATTTAGAAAATACTTAAATAAATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGA > NZ_CP009273/2790485‑2790647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |