| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,237,623 | (T)7→8 | coding (914/915 nt) | ldcA ← | muramoyltetrapeptide carboxypeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,237,616 | 1 | . | T | 100.0% | 70.2 / NA | 20 | intergenic (‑89/+6) | cvrA/ldcA | potassium/proton antiporter/muramoyltetrapeptide carboxypeptidase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (14/6); total (14/6) | |||||||||||
GGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGA‑TTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGC > NZ_CP009273/1237529‑1237696 | ggtcggtTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGA‑tt > 2:995320/1‑90 (MQ=255) gTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGa > 2:349171/1‑90 (MQ=255) tataAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCt < 1:236058/90‑1 (MQ=255) taAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTa < 2:440628/71‑1 (MQ=255) taAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTa > 1:440628/1‑71 (MQ=255) taAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTaa < 1:249364/90‑1 (MQ=255) taAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTaa > 1:582748/1‑90 (MQ=255) aaCCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATc > 1:587139/1‑90 (MQ=255) aaCCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATc > 1:61192/1‑90 (MQ=255) aaCCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATc > 1:391305/1‑90 (MQ=255) cccTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGt > 1:391809/1‑90 (MQ=255) cTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCa > 2:7259/1‑90 (MQ=255) tACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCaa > 1:916039/1‑90 (MQ=255) tACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCaa > 2:459841/1‑90 (MQ=255) agagACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCg < 2:391305/90‑1 (MQ=255) cAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGgtgt < 2:104823/90‑1 (MQ=255) ttAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATg > 2:554530/1‑90 (MQ=255) ttAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATg > 2:590360/1‑90 (MQ=255) tAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATgg > 2:500184/1‑90 (MQ=255) tAGCCCTGAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATgg > 2:702560/1‑90 (MQ=255) gAAGCGTGATTTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTgc < 1:349171/90‑1 (MQ=255) | GGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGA‑TTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCGGGTGTTATTCAGAATGGCATGTGC > NZ_CP009273/1237529‑1237696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |