| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,379,045 | 0 | T | G | 61.1% | ‑2.1 / 11.8 | 18 | G224G (GGT→GGG) | ycjX | YcjX family protein |
| Reads supporting (aligned to +/- strand): ref base T (3/4); new base G (11/0); total (14/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.14e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.27e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGATTATCTCCACCACTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAGGCCGATAAGCATACCAAT > NZ_CP009273/1378964‑1379129 | cGATTATCTCCACCACTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGccccc > 2:961011/1‑88 (MQ=255) cTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGGGCCCCCGCTGCCATTCTTtcc > 1:340305/1‑90 (MQ=255) cTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCGCGCCGCAATTCTTccc > 1:994571/1‑90 (MQ=255) gagCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCCCGCCGCAATTTTTCCCCTGGCCg > 1:716402/1‑90 (MQ=255) gCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGGGCCCCCGCCGCAATTCTTCCCCTGGCCggg > 1:753992/1‑89 (MQ=255) gCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCGCGCTGCAATTCTTCCCGTGGCCggg > 1:902782/1‑89 (MQ=255) cAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGGGCCCCCCCCGCAATTCTTTCCCTGGCCgggt > 1:885236/1‑88 (MQ=255) aGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATg > 2:140943/1‑90 (MQ=255) ggggCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGGGCCCCCCCCGCAATTCTTCCCCTGGGCGGgtgt > 1:893138/1‑90 (MQ=255) cTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGAt < 2:352249/90‑1 (MQ=255) tGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCGCGCTGCAATTCTTCCCGTGGGCGGGTGTCGATa > 1:379514/1‑90 (MQ=255) ttATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCGCCCTGCAATTCTTCCCGTGGCCGGGTGTTGATATCTggg > 1:848197/1‑90 (MQ=255) ccTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCg < 1:523599/85‑1 (MQ=255) ccTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCg > 2:523599/1‑85 (MQ=255) ggCGCTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCCCGCCGCAATTCTTCCCGCGGCCGGGTGTCGGTACCTGGGGCGAGTCCAAAc > 1:822196/1‑90 (MQ=255) cTTTGTCTTGCCGGGAGATATGGCAGGGGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGGGAGGCCAAACTggg > 2:862521/1‑89 (MQ=255) gTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAg < 1:862521/90‑1 (MQ=255) gCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAGGCCGATAAGCATACCAAt < 1:294194/90‑1 (MQ=255) | CGATTATCTCCACCACTGTAAAGAGCAGGGGCTGCACTTTATTCAGCCTGGGCGCTTTGTCTTGCCGGGAGATATGGCAGGTGCGCCCGCGCTGCAATTCTTCCCGTGGCCGGATGTCGATACCTGGGGCGAGTCCAAACTGGCGCAGGCCGATAAGCATACCAAT > NZ_CP009273/1378964‑1379129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |