| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,763,617 | A→G | I186V (ATT→GTT) | yfjR → | WYL domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,763,617 | 0 | A | G | 94.4% | 51.6 / ‑4.0 | 18 | I186V (ATT→GTT) | yfjR | WYL domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (10/7); total (11/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATCCACCAGCAGACCTGGTATCTGGTGGCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGATTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTCTGTGTCGCCTGGTTGAAGACCCGGTCTTCATTCAG > NZ_CP009273/2763538‑2763691 | cATCCACCAGCAGACCTGGTATCTGGTGGCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCttt > 2:903288/1‑90 (MQ=255) gACCTGGTATCTGGTGGCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACttt > 1:913803/1‑90 (MQ=255) cTGGTTGCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAAt > 1:801007/1‑90 (MQ=255) cTGGTGGCTGAACACGAAGGGCATTTCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAAt > 1:686193/1‑90 (MQ=255) cTGGTGGCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAAt > 2:94832/1‑90 (MQ=255) tggttgCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATg < 2:801007/90‑1 (MQ=255) gtggCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGAc < 2:208841/90‑1 (MQ=255) ggCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAg > 1:168195/1‑90 (MQ=255) ggCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGATTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAg > 2:581095/1‑90 (MQ=255) cTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTc < 2:477913/90‑1 (MQ=255) atatCGCCGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTCTGTGTCGCCTGGTTg > 2:843986/1‑90 (MQ=255) ccGTATTCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTCTGTGTCGCCTGGTTGAAGAcc > 2:969380/1‑90 (MQ=255) ttCACACTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTCTGTGTCGCCTGGTTGAAGACCCGGTc < 1:870020/90‑1 (MQ=255) cacaCTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTCTGTGTCGCCTGGTTGAAGACCCGGTCtt < 2:223127/90‑1 (MQ=255) cacTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTcg < 2:392023/46‑1 (MQ=255) cacTTGATGAAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTcg > 1:392023/1‑46 (MQ=255) tgatgaAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTCTGTGTCGCCTGGTTGAAGACCCGGTCttcattca < 1:423154/90‑1 (MQ=255) gatgaAATCCATCTGGTTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTCTGTGTCGCCTGGTTGAAGACCCGGTCTTCATTCAg > 1:201622/1‑90 (MQ=255) | CATCCACCAGCAGACCTGGTATCTGGTGGCTGAACACGAAGGGCATATCGCCGTATTCACACTTGATGAAATCCATCTGATTCAGCCTTTGCAGGAGACTTTTCGCCGCAATGACAGTCTGTGTCGCCTGGTTGAAGACCCGGTCTTCATTCAG > NZ_CP009273/2763538‑2763691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |