| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,149,054 | G→C | A213P (GCG→CCG) | oxyR → | DNA‑binding transcriptional regulator OxyR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,149,054 | 0 | G | C | 90.6% | 166.7 / 9.7 | 53 | A213P (GCG→CCG) | oxyR | DNA‑binding transcriptional regulator OxyR |
| Reads supporting (aligned to +/- strand): ref base G (2/3); new base C (18/30); total (20/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.68e-01 | |||||||||||
GATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTT > NZ_CP009273/4148970‑4149132 | gATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGAt < 1:301114/90‑1 (MQ=255)gATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGAt < 2:549483/90‑1 (MQ=255)gATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGAt < 2:236320/90‑1 (MQ=255) tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGa < 1:8512/90‑1 (MQ=255) tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGa < 1:98058/90‑1 (MQ=255) cTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGaa < 2:668172/90‑1 (MQ=255) gggAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATacac < 1:954221/90‑1 (MQ=255) ggAAAAACAGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGa < 1:9560/84‑1 (MQ=255) ggAAAAACAGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGa > 2:9560/1‑84 (MQ=255) gAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGAt > 2:492450/1‑78 (MQ=255) gAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGAt < 1:492450/78‑1 (MQ=255) aaaCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTc > 2:199384/1‑90 (MQ=255) ctgctgATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCcgc < 2:367389/90‑1 (MQ=255) tgctgATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCcgcg > 1:497743/1‑90 (MQ=255) gctgATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCTGGGGCGGATGAAGACACACACTTCcgcgc > 1:956339/1‑90 (MQ=255) gATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGAc < 2:705568/90‑1 (MQ=255) gATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGAc < 1:822371/90‑1 (MQ=255) gATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGAc < 1:420365/90‑1 (MQ=255) aTGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGAcc < 2:42981/90‑1 (MQ=255) tGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCa < 1:115062/90‑1 (MQ=255) tGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCa < 2:397909/90‑1 (MQ=255) tGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCa < 2:47093/90‑1 (MQ=255) tGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCa < 1:821524/90‑1 (MQ=255) tGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCa < 2:918285/90‑1 (MQ=255) cTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGc < 2:263096/90‑1 (MQ=255) cTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGc < 2:666874/90‑1 (MQ=255) tGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCa > 1:309202/1‑87 (MQ=255) tGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCa < 2:309202/87‑1 (MQ=255) tGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAAc < 1:428951/90‑1 (MQ=255) gTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAActc < 2:413422/90‑1 (MQ=255) aCTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgc < 2:1000920/90‑1 (MQ=255) gcgcGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAActc < 2:549187/80‑1 (MQ=255) gcgcGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAActc > 1:549187/1‑80 (MQ=255) gcgcGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgcgc > 2:726828/1‑85 (MQ=255) gcgcGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgcgc < 1:726828/85‑1 (MQ=255) gATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtggtg > 2:36362/1‑90 (MQ=255) gATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtggtg > 1:614855/1‑90 (MQ=255) tCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggc > 2:163998/1‑90 (MQ=255) ggCAATGGGTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcggc < 2:102359/90‑1 (MQ=255) gggTTTCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAg > 2:915866/1‑90 (MQ=255) ttCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCggg > 2:94395/1‑90 (MQ=255) ttCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCa > 2:970494/1‑81 (MQ=255) ttCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCa < 1:970494/81‑1 (MQ=255) ttCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCggg > 2:534941/1‑90 (MQ=255) ttCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCggg > 2:519464/1‑90 (MQ=255) ttCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCggg < 2:290254/90‑1 (MQ=255) ttCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCggg > 1:474746/1‑90 (MQ=255) tCTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGa < 1:534941/90‑1 (MQ=255) cTGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGAt < 1:199384/90‑1 (MQ=255) tGTTTTGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATc < 1:422131/90‑1 (MQ=255) ttGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACtt > 2:29220/1‑90 (MQ=255) ttGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACtt > 1:515312/1‑90 (MQ=255) ttGAAGCCGGGCCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGGGGCGGCAGGTAGCGGGATCACtt > 1:552753/1‑90 (MQ=255) | GATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTT > NZ_CP009273/4148970‑4149132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |