New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 1203246 =29 (0.410)29 (0.510) 21/134 0.7 64.2% coding (290/630 nt) BW25113_RS05990 hypothetical protein
?NZ_CP009273 1205075 = 9 (0.160)coding (40/540 nt) BW25113_RS06005 phage tail protein

Only 100 of 117 total aligned reads displayed.

TACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGT  >  NZ_CP009273/1203157‑1203331
                                                                                          |                                                                                     
tACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT                                                                                       >  2:282787‑M1/1‑90 (MQ=255)
tACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT                                                                                       >  2:4277‑M1/1‑90 (MQ=255)
  ccGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG                                                                                     >  1:951387‑M1/1‑90 (MQ=255)
    gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATTTAAAACCGGTGGCCCTGGGGAAAACGGTCTTCGAAAACCTTGGt                                                                                   >  2:159232/1‑90 (MQ=9)
    gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT                                                                                   >  1:1906413‑M1/1‑90 (MQ=255)
    gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT                                                                                   >  1:1245725‑M1/1‑90 (MQ=255)
     gtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt                                                                                   <  2:347152‑M1/5‑1 (MQ=255)
     gtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGt                                                                                   <  2:783031‑M1/5‑1 (MQ=255)
       cTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG                                                                                >  2:828137‑M1/1‑90 (MQ=255)
        ttCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG                                                                               >  1:1038370‑M1/1‑90 (MQ=255)
         atagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTgg                                                                               <  2:1069651‑M1/9‑1 (MQ=255)
          tagccaataagcatgttaaatccccctggtaaaagcaggaattatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg                                                                              <  2:603252‑M1/10‑1 (MQ=255)
            gccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag                                                                            <  1:1467355‑M1/12‑1 (MQ=255)
            gccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag                                                                            <  2:1959842‑M1/12‑1 (MQ=255)
             gcgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                          <  1:1514864‑M1/90‑1 (MQ=255)
               gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG                                                                        >  1:1492328‑M1/1‑90 (MQ=255)
               gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA                                                                           >  2:489018‑M1/1‑87 (MQ=255)
               gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA                                                                           <  1:489018‑M1/87‑1 (MQ=255)
               aataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAg                                                                         <  1:2036946‑M1/15‑1 (MQ=255)
                ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc                                                                       <  1:73829‑M1/90‑2 (MQ=255)
                 tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct                                                                      <  2:1262351‑M1/90‑3 (MQ=255)
                   ctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct                                                                    <  1:1209297‑M1/90‑5 (MQ=255)
                   ctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct                                                                    <  1:828137‑M1/90‑5 (MQ=255)
                   ctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct                                                                    <  1:1918933‑M1/90‑5 (MQ=255)
                     catgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa                                                                   >  1:1448417‑M1/70‑90 (MQ=255)
                      atgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgtt                                                                                      <  2:388979‑M1/2‑1 (MQ=255)
                      atgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa                                                                  <  1:877886‑M1/22‑1 (MQ=255)
                       tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat                                                                <  2:1330287‑M1/90‑9 (MQ=255)
                       tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat                                                                <  2:38069‑M1/90‑9 (MQ=255)
                       tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat                                                                <  1:1600827‑M1/90‑9 (MQ=255)
                        gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc                                                                <  1:1130449‑M1/24‑1 (MQ=255)
                          gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac                                                             >  2:319559‑M1/1‑79 (MQ=255)
                          gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa                                                             >  2:2021614/1‑90 (MQ=255)
                          gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa                                                             >  1:170380/1‑90 (MQ=255)
                            cGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct                                                           <  1:792665‑M1/90‑14 (MQ=255)
                             gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctg                                                          >  1:1888102‑M1/1‑76 (MQ=255)
                             gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                          >  2:1035426‑M1/1‑74 (MQ=255)
                             gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA                                                                          <  1:1035426‑M1/74‑1 (MQ=255)
                                  aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                     <  1:4277‑M1/90‑20 (MQ=255)
                                  aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                     <  1:466552‑M1/90‑20 (MQ=255)
                                   ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                     >  1:277702‑M1/56‑90 (MQ=255)
                                   ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                     >  1:619859‑M1/56‑90 (MQ=255)
                                   ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca                                                     >  2:716832‑M1/56‑90 (MQ=255)
                                    tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                    >  2:877886‑M1/55‑90 (MQ=255)
                                    tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                    >  2:1524428‑M1/55‑90 (MQ=255)
                                    tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                    <  2:755283‑M1/36‑1 (MQ=255)
                                     ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg                                                  <  2:313721/90‑1 (MQ=255)
                                      gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACg                                                  >  2:527588‑M1/53‑90 (MQ=255)
                                       gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                <  1:1490391/90‑1 (MQ=255)
                                       gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                <  1:2046969/90‑1 (MQ=255)
                                       gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                <  2:1934243/90‑1 (MQ=255)
                                        tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg                                               <  1:1323438‑M1/90‑26 (MQ=255)
                                        tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                               <  2:918169/90‑1 (MQ=255)
                                        tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                               <  2:1906413/90‑1 (MQ=255)
                                        tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                               <  2:792475/90‑1 (MQ=255)
                                        tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                               <  1:746706/90‑1 (MQ=255)
                                        aaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                >  1:1959842‑M1/51‑90 (MQ=255)
                                         aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                               >  1:603252‑M1/50‑90 (MQ=255)
                                                    gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg                                    <  2:676802‑M1/52‑1 (MQ=255)
                                                    gatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg                                    <  1:2061647‑M1/52‑1 (MQ=255)
                                                     atgccatttgcttgttatttcttctttttcataaacgTTGGTTTGGGGGAGGGACAAAAACTCAATGCAGCAACGGCTACATTAGGCCGc                                   <  2:1507200‑M1/53‑1 (MQ=255)
                                                       tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc                                <  2:1069814/90‑1 (MQ=255)
                                                       tCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc                                <  1:279359/90‑1 (MQ=255)
                                                        ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc                                >  2:1467355‑M1/35‑90 (MQ=255)
                                                        cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                               <  1:1020835/90‑1 (MQ=255)
                                                        cGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCg                               <  1:466355/90‑1 (MQ=255)
                                                         ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                <  2:233202/72‑1 (MQ=255)
                                                         ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc                                                >  1:233202/1‑72 (MQ=255)
                                                         ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                               <  1:1517347/73‑1 (MQ=255)
                                                         ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt                                               >  2:1517347/1‑73 (MQ=255)
                                                           tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGt                             <  1:872191‑M1/59‑1 (MQ=255)
                                                           aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca                            <  2:1245725‑M1/90‑45 (MQ=255)
                                                             ggCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc                          <  1:1012698/90‑1 (MQ=255)
                                                              gcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc                          >  2:1503918‑M1/29‑90 (MQ=255)
                                                               cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa                         >  2:939549‑M1/28‑90 (MQ=255)
                                                               cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                        <  2:1199180/90‑1 (MQ=255)
                                                                ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                        >  1:347152‑M1/27‑90 (MQ=255)
                                                                 cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc                      >  2:674837‑M1/1‑40 (MQ=255)
                                                                    gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcca                    >  2:1050428‑M1/1‑38 (MQ=255)
                                                                    gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcca                    >  1:780280‑M1/1‑38 (MQ=255)
                                                                    gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                       >  2:1798949‑M1/1‑38 (MQ=255)
                                                                    gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                       <  1:1798949‑M1/71‑34 (MQ=255)
                                                                    gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct                                                                    >  1:1324846‑M1/1‑38 (MQ=255)
                                                                    gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctct                                                                    <  2:1324846‑M1/42‑5 (MQ=255)
                                                                      gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaac                  <  1:1580241‑M1/90‑55 (MQ=255)
                                                                        tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAc                >  1:1507200‑M1/19‑90 (MQ=255)
                                                                         aaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacagg               >  1:1117555‑M1/1‑33 (MQ=255)
                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggc          >  1:777809‑M1/1‑28 (MQ=255)
                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggc          >  1:1859905‑M1/1‑28 (MQ=255)
                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGctctgcat                                                                >  1:1491660‑M1/1‑28 (MQ=255)
                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGctctgcat                                                                <  2:1491660‑M1/36‑9 (MQ=255)
                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa          >  1:320303/1‑90 (MQ=255)
                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa          >  2:1328824/1‑90 (MQ=255)
                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa          >  2:313275/1‑90 (MQ=255)
                                                                              ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTa          >  1:920108/1‑90 (MQ=255)
                                                                                ttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATg        <  2:1060961‑M1/80‑1 (MQ=255)
                                                                                 tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGa       <  1:712377/90‑1 (MQ=255)
                                                                                   gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt     <  1:2021614/90‑1 (MQ=255)
                                                                                   ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt     <  2:1020815‑M1/83‑1 (MQ=255)
                                                                                      aacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt  >  2:2061647‑M1/5‑90 (MQ=255)
                                                                                          |                                                                                     
TACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGT  >  NZ_CP009273/1203157‑1203331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.